Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02006 ATGGTGAACCCTAAATGCTTCCTCGACGTCAGCATTGGCGGGGAGCTTGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTCGTTCCCAAAACCGCCGAGAATTTCCGAGCCCTCTGCACCGGCGAAAAGGGCACCGCCCCCAACACCGCCGTCCCCCTCCACTACAAGGGCGTGTGTTTCCACCGCGTGATCAAAGGCTTCATGATCCAGGGCGGCGACATCTCCGCCGGCGACGGCACCGGCGGGGAATCAATCTACGGCTTGAAGTTCGAGGACGAGAACCTGGAGCTGAAGCACGAGAGGAAGGGGATGCTCTCCATGGCTAATTCGGGAAGCAACACCAATGGCTCTCAGTTCTTCATCACCACCACGCGCACCCCTCACTTGGACGGAAAGCACGTCGTTTTCGGGAAGGTTCTAAAAGGAATGGGCGTCGTTCGCTCCGTGGAACACGTCGTTACCGGCGAAAACGACCGTCCTACTCAGGGTGTTGTAATCGTTGATTGTGGTGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTTTTTAAGGACGGTGACACTTATCCTGATTGGCCTGCTGATCTCGATGTCAAACCCGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATTAAGTCTCTTGGGAATGAACAATTTAAGGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCATTACTGGATTCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTTCTGTAGAAAACTTCAAGAAAGCATTAGAGTTGGAGCCAAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAAATGTTCAAATAG 942 0.5 MVNPKCFLDVSIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGTAPNTAVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMANSGSNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGVVRSVEHVVTGENDRPTQGVVIVDCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKSLGNEQFKACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDASVENFKKALELEPNDGGIKKEYATARRKVADRRDQEKKAYSKMFK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02006 313 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Pumo4g02006 313 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Pumo4g02006 313 SMART tpr_5 250 283 IPR019734 GO:0005515
Pumo4g02006 313 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Pumo4g02006 313 CDD cyclophilin_ABH_like 4 171 - -
Pumo4g02006 313 ProSiteProfiles TPR repeat region circular profile. 250 283 - -
Pumo4g02006 313 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Pumo4g02006 313 SUPERFAMILY TPR-like 225 310 IPR011990 GO:0005515
Pumo4g02006 313 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 Gene3D - 1 179 IPR029000 -
Pumo4g02006 313 Gene3D Tetratricopeptide repeat domain 209 313 IPR011990 GO:0005515
Pumo4g02006 313 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Pumo4g02006 313 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 Pfam Tetratricopeptide repeat 250 283 IPR001440 GO:0005515
Pumo4g02006 313 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Pumo4g02006 313 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02006 Pumo-Chr4 27471692 27474764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02006 18 170 U-box Gene Family AT5G67530 45.455 6.52e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02006 K05864 - gmx:100805889 584.719