LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g02006	ATGGTGAACCCTAAATGCTTCCTCGACGTCAGCATTGGCGGGGAGCTTGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTCGTTCCCAAAACCGCCGAGAATTTCCGAGCCCTCTGCACCGGCGAAAAGGGCACCGCCCCCAACACCGCCGTCCCCCTCCACTACAAGGGCGTGTGTTTCCACCGCGTGATCAAAGGCTTCATGATCCAGGGCGGCGACATCTCCGCCGGCGACGGCACCGGCGGGGAATCAATCTACGGCTTGAAGTTCGAGGACGAGAACCTGGAGCTGAAGCACGAGAGGAAGGGGATGCTCTCCATGGCTAATTCGGGAAGCAACACCAATGGCTCTCAGTTCTTCATCACCACCACGCGCACCCCTCACTTGGACGGAAAGCACGTCGTTTTCGGGAAGGTTCTAAAAGGAATGGGCGTCGTTCGCTCCGTGGAACACGTCGTTACCGGCGAAAACGACCGTCCTACTCAGGGTGTTGTAATCGTTGATTGTGGTGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTTTTTAAGGACGGTGACACTTATCCTGATTGGCCTGCTGATCTCGATGTCAAACCCGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATTAAGTCTCTTGGGAATGAACAATTTAAGGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCATTACTGGATTCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTTCTGTAGAAAACTTCAAGAAAGCATTAGAGTTGGAGCCAAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAAATGTTCAAATAG	942	0.5	MVNPKCFLDVSIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGTAPNTAVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMANSGSNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGVVRSVEHVVTGENDRPTQGVVIVDCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKSLGNEQFKACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDASVENFKKALELEPNDGGIKKEYATARRKVADRRDQEKKAYSKMFK	313

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g02006	313	ProSiteProfiles	TPR repeat profile.	250	283	IPR019734	GO:0005515
	Pumo4g02006	313	FunFam	Peptidyl-prolyl cis-trans isomerase D	1	178	-	-
	Pumo4g02006	313	SMART	tpr_5	250	283	IPR019734	GO:0005515
	Pumo4g02006	313	SUPERFAMILY	Cyclophilin-like	1	176	IPR029000	-
	Pumo4g02006	313	CDD	cyclophilin_ABH_like	4	171	-	-
	Pumo4g02006	313	ProSiteProfiles	TPR repeat region circular profile.	250	283	-	-
	Pumo4g02006	313	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	5	173	-	-
	Pumo4g02006	313	SUPERFAMILY	TPR-like	225	310	IPR011990	GO:0005515
	Pumo4g02006	313	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	172	IPR002130	GO:0000413\|GO:0003755
	Pumo4g02006	313	Gene3D	-	1	179	IPR029000	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g02006	Pumo-Chr4	27471692	27474764	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g02006	18	170	U-box Gene Family	AT5G67530	45.455	6.52e-35	131

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g02006	K05864		-	gmx:100805889	584.719

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