Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02002 ATGGGTCTCTGCACTTCGAAGCCTCGTGCAAACACACTCTCTTCTTCTCCAAATTCACACACCCACTACACAGACACCAATGCCAATGAACAATTACGAAAAAACCCCACTCCCACTCCTAAAAAATCTCCTCTTTTCCCGTTTTACACTCCGAGCCCGGCCCACCACTTTTTCTCCGGCAAGTCTCCGGCGCCGGCGACTCCCCGGAGGTTCTTCAAGCCGCCGTCGCCGGCGAAGCACATTCGGGCCGTGCTGGCCCGGCGACACGGGTCGGCGAAGCCCAACGGGTCCACCATCCCGGAAGATGAAGTGGTTGCTCTCGACAAGAACTTCGGATTCTCGAAACAGTTTGAGCACAAGTTTGAGGTTGGTGACGAGGTTGGAAGAGGACACTTTGGTTACACTTGTGCTGCAAAGTTCCTTAAGGGCCAACTCAAAGGCCAACACGTCGCTGTCAAAGTCATCCCCAAAGCCAAGATGACCACTGCAATTGCGATTGAGGATGTGAGGAGGGAGGTGAAGATATTGAGAGCTTTGACTGGACATAAGAATCTGATTCAATTCCATGATGCATACGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGTGGGAAATACACAGAGGAAGATGCAAAAGCTGTCATGATACAGATACTGAATGTTGTTGCGTTTTGTCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCAGAGAATTTCTTATTCACATCCAAAGATGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCAGATTTTGTCAAACCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCAGAAGTTCTGCATAGAGCTTACAGTACAGAGGCTGATGTGTGGAGTGTTGGTGTGATTGCATATATTTTGTTATGTGGCAGCCGTCCATTTTGGGCGCGGACTGAGTCTGGGATCTTTCGCGCCGTGTTGAAAGCTGATCCAATTTTTGATGAACCTCCTTGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAGGCATTAGGTCATCCGTGGATTAAAAATTATAAGGATGTAAAAGTACCCCTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCTTCCTCTCTACGAAAAGCAGCTTTAAGGGCTTTGTCTAAGACATTAGCTATTGAAGAGCTGCAATATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACTATTAGCTTGGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACAGATGCTATGAAGGAGTCACGCATTTCTGATTTTCTGGCATCACTTAATGCATTGCAATATAGATGGATGGCTTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAATAGGGCCATAGTCGTTGAGGAACTAGCTTCGGAACTTGGCCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTCCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGGTTTGTTAAATTATTGCATGGTCCATCTCGAAGTTTTGCAAAACCTCACTAG 1725 0.4562 MGLCTSKPRANTLSSSPNSHTHYTDTNANEQLRKNPTPTPKKSPLFPFYTPSPAHHFFSGKSPAPATPRRFFKPPSPAKHIRAVLARRHGSAKPNGSTIPEDEVVALDKNFGFSKQFEHKFEVGDEVGRGHFGYTCAAKFLKGQLKGQHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLKADPIFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLAIEELQYLKEQFALLEPNKTNTISLENIKAALMKNATDAMKESRISDFLASLNALQYRWMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVVEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSFAKPH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02002 574 CDD STKc_CAMK 120 382 - -
Pumo4g02002 574 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Pumo4g02002 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 107 549 - -
Pumo4g02002 574 ProSiteProfiles Protein kinase domain profile. 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02002 574 FunFam CDPK-related kinase 1 420 492 - -
Pumo4g02002 574 MobiDBLite consensus disorder prediction 1 46 - -
Pumo4g02002 574 Gene3D - 423 492 - -
Pumo4g02002 574 FunFam CDPK-related kinase 3 113 285 - -
Pumo4g02002 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Pumo4g02002 574 ProSitePatterns Protein kinases ATP-binding region signature. 127 153 IPR017441 GO:0005524
Pumo4g02002 574 FunFam CDPK-related kinase 1 114 209 - -
Pumo4g02002 574 SUPERFAMILY EF-hand 411 565 IPR011992 -
Pumo4g02002 574 Gene3D - 401 562 - -
Pumo4g02002 574 Gene3D Transferase(Phosphotransferase) domain 1 210 396 - -
Pumo4g02002 574 MobiDBLite consensus disorder prediction 7 38 - -
Pumo4g02002 574 Pfam Protein kinase domain 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02002 574 SMART serkin_6 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02002 574 FunFam Calcium-dependent protein kinase SK5 293 388 - -
Pumo4g02002 574 SUPERFAMILY Protein kinase-like (PK-like) 119 413 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02002 Pumo-Chr4 27426111 27429689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02002 1 574 EF-hand Containing Proteins AT3G50530 72.785 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo4g02002 Pkinase 5.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02002 K00924 - gmx:100803313 1093.18