Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01982 ATGGTGGTGATTGATGAAAAGAACTGGGACCGTGTGATTAGGAGGGACGTGATGGAGCTTCCGCAAAATGATCAATTTGTAACTGTGGCATATTATGGGGAAGAGTTGCATGGGGGCGTGCCTCTTCCCCACTTCTCTAGAATGTCTCCTTTAAACATGGATAGACAAAACAAGGCGGTGGAGAATAAATACAAGCTCTTGAACAGTCCGATAAAACAAGCAACACCTGCTGAAGCTCAGAAGTTTGCAAGTTCCATTAAGGTCGCAACAGAAGGAACATCATCTCGTGGTGAGGCCATGTCATCTGCTGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGGAACGAGAATTCCCTAGTTTTGTGAAGTCTTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGTCTGCCTGTGTCATTCTGTAAAAGATACTTACCAGATAAGGATACAACATTCATTTTGGAAGATGAATCTGGTAAAGAATACATGACAAAATATATTGCATGTAAGACAGGATTAAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGCAGTGGTATTCCAATTAGTGGAACCTACCAAATTTAAGGTTTATATAATAAGAGCTAATAATATGAAGGAACCAGATGGAGCCTTTCTGAATTTTGATAGTTGCATAAAACAAAAAATGGGAGGCAAAGATAATGCAGATACTGATGTTGTGACATGTAATAGCTCAAAGAGAAAGCATGGTAAATCTGTACCACAAGATGTCCAAAAGAAAAAGAAGACCAACATGTCAAGATTGAGACCTAAGGCAAGGCCATCAACCGAACAATCCGAAAATGATAGTGAGGAAGCTCTCTCAGAAGTTATGGAGGGCTTTAAAATGCTTGAGTTTGAAGATGTGAAAGGTTTTGAAAATTTCAACATCATAGTTGATGGAATGCCAATAGATGCTGAATTATCCACTGAGGTTCGAAACAAGTACTACAGGCTCTGCTGCAGTCAACATGCCTTTCTTCATGAAAATCTAATTAAAGGCATGAATTATAAGTTGATTGCTGGAATTATATCGGAAACTGTCAACATTGCTGATGCCATAAAGGTTAGTGTGATATGTACCCCGCGTGTTGAATTTGCTAATTGGGACAAAACTTTGCTTGCCTTTGAGCATTTGGGTATGAATGTTGAATTTCTAAGAATCCGATTACGTCGGCTTGTAAGCATTGCCTATGAGAAAGATGATGCCTCAGAGACCAAAAAATACTTGGCGTATAGAAATGAATATAGTCGAGCAGATGATGAAATAAAGAACATGGAAGTCAAGCTCGAAGAATTAAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGAGAGTTTGAAGTGCAAAGCTGAAAGCAATCATATCAAGTTTCAGAAAGAGGTCGCTGCTCCTTGGTGA 1449 0.3948 MVVIDEKNWDRVIRRDVMELPQNDQFVTVAYYGEELHGGVPLPHFSRMSPLNMDRQNKAVENKYKLLNSPIKQATPAEAQKFASSIKVATEGTSSRGEAMSSAVLQAEEVQSNLEREFPSFVKSLVRSHVASCFWMGLPVSFCKRYLPDKDTTFILEDESGKEYMTKYIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNMKEPDGAFLNFDSCIKQKMGGKDNADTDVVTCNSSKRKHGKSVPQDVQKKKKTNMSRLRPKARPSTEQSENDSEEALSEVMEGFKMLEFEDVKGFENFNIIVDGMPIDAELSTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIISETVNIADAIKVSVICTPRVEFANWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEKDDASETKKYLAYRNEYSRADDEIKNMEVKLEELKGACNGFGAYLESLKCKAESNHIKFQKEVAAPW 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01982 482 CDD B3_DNA 119 210 IPR003340 GO:0003677
Pumo4g01982 482 MobiDBLite consensus disorder prediction 233 288 - -
Pumo4g01982 482 SUPERFAMILY DNA-binding pseudobarrel domain 115 212 IPR015300 -
Pumo4g01982 482 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 86 214 IPR044837 -
Pumo4g01982 482 ProSiteProfiles B3 DNA-binding domain profile. 121 212 IPR003340 GO:0003677
Pumo4g01982 482 Coils Coil 425 452 - -
Pumo4g01982 482 SMART B3_2 121 212 IPR003340 GO:0003677
Pumo4g01982 482 Pfam B3 DNA binding domain 121 211 IPR003340 GO:0003677
Pumo4g01982 482 Gene3D - 100 214 IPR015300 -
Pumo4g01982 482 MobiDBLite consensus disorder prediction 245 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01982 Pumo-Chr4 27072972 27077380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01982 98 271 B3 DNA Binding Superfamily AT3G19184 39.891 4.36e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo4g01982 B3 8.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01982 - - gmx:100819237 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01982 4 27072972 27077380 Pumo4g01982 4 27072972 27077380 ECH