Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01978 ATGTCGCAGCGTTCGACGCCAGCGCCGTTTTTGACGAAGACGTATCTGTTGGTGGATGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAAGCGGCAACACTTTTGTCGTTTGGAAGCACGCCGATTTCGCTAAGGATTTGCTTCCCAAGTACTTCAAGCACGACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTTCGAAAGATTGTTCCCGACAAATGGGAATTCGCCAACGAGAATTTCAAGCGAGGGCAGAAGGATATTCTCGGCGACATCAAGCGGCGGAAGACGGTGGCCCAGTCGCCGGCGACCGGAAAATCCGGCGGCGGCGGAAACATCTCGGCGTCCCACTCCGGCGGTGACGACATGGGGTCGACGTCAACGGGGTCGGTGGATGCGGCGGCGGCGGCGACGACGACCCAGTGCGCGGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCGCGCGAAGAAGCAGTGCGAGGAGTTGGTAGCGTTTCTGAGGGACTCGTTGAAGGTGTGCCCCGATGTGATCGACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCAACGATGATGCGGTGCGTTTTGATGCTATTCGTGATGATGACGAAAATGCTGTAGTAGGTGAGTGTCAACAACAACAACAACAACCACCCAAAGGTGAAGAAAGTTTGAAACTGTTTGGTGTTTGGTTGAAGGGTCAAAATGGGAAAGACATAGACAAAGACAAATTGAAGATGGGTAATGGTAACTGTCGCAAGAGAGGGCGCGAAGACCCTATTGCCACCACTGCCAAGGAATTGAAGACCCTTGTCTAG 864 0.5359 MSQRSTPAPFLTKTYLLVDDPATDDVISWSESGNTFVVWKHADFAKDLLPKYFKHDNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKDILGDIKRRKTVAQSPATGKSGGGGNISASHSGGDDMGSTSTGSVDAAAAATTTQCADLSGENEKLKKDNEKLSGELARAKKQCEELVAFLRDSLKVCPDVIDRIIRQGTCGSSNDDAVRFDAIRDDDENAVVGECQQQQQQPPKGEESLKLFGVWLKGQNGKDIDKDKLKMGNGNCRKRGREDPIATTAKELKTLV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01978 287 Gene3D - 2 101 IPR036388 -
Pumo4g01978 287 FunFam Heat stress transcription factor B-4 2 100 - -
Pumo4g01978 287 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 234 IPR027725 -
Pumo4g01978 287 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01978 287 Coils Coil 146 173 - -
Pumo4g01978 287 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Pumo4g01978 287 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01978 287 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01978 287 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01978 287 MobiDBLite consensus disorder prediction 98 135 - -
Pumo4g01978 287 MobiDBLite consensus disorder prediction 104 135 - -
Pumo4g01978 287 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01978 287 Gene3D - 142 184 - -
Pumo4g01978 287 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01978 Pumo-Chr4 27018612 27022061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01978 2 253 HSF AT4G36990 54.510 9.70e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo4g01978 HSF_DNA-bind 8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01978 K09419 - gmx:100801897 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01978 4 27018612 27022061 Pumo4g01978 4 27018612 27022061 ECH
Pumo8g01946 8 55998717 56000787 Pumo4g01978 4 27018612 27022061 PCT