Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01970 ATGTCGCAGCGTTCGACGCCAGCGCCGTTTTTGACGAAGACGTATCTGTTGGTGGATGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAAGCGGCAACACTTTTGTCGTTTGGAAGCACGCCGATTTCGCTAAGGATTTGCTTCCCAAGTACTTCAAGCACGACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTTCGAAAGATTGTTCCCGACAAATGGGAATTCGCCAACGAGTATTTCAAGCGAGGGCAGAAGGATATTCTCGGCGAGATCAAGCGGCGGAAGACGGTGGCCCAGTCGCCGGCGACCGGAAAATCCGGCGGCGGCGGCGGAAACATCTCGGCGTCCCACTCCGGCGGTGACGACATGGGGTCGACGTCGACGGGGTCGGTGGATGCGGCGGCGGCGGCGGCGACGACGACCCAGTGCGCGGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCGCGCGAAGAAGCAGTGCGAGGAGTTGGTAGCGTTTCTGAGGGACTCGTTGAAGGTGTGCCCCGATGTGATCGACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCAACGATGATGCGGTGCGTTTTGATGCTATTCGTGATGATGACGAAAATGCTGTAGTAGGTGAGTGTCAACAACAACAACAACAACCACCCAAAGGTGAAGAAAGTTTGAAACTGTTTGGTGTTTGGTTGAAGGGTCAAAATGGGAAAGACATAGACAAAGACAAATTGAAGATGGGTAATGGTAACTGTCGCAAGAGAGGGCGGGAAGACCCTATTGCCACCACTGCCAAGGAATTGAAGACCCTTGTCTAG 870 0.5402 MSQRSTPAPFLTKTYLLVDDPATDDVISWSESGNTFVVWKHADFAKDLLPKYFKHDNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKDILGEIKRRKTVAQSPATGKSGGGGGNISASHSGGDDMGSTSTGSVDAAAAAATTTQCADLSGENEKLKKDNEKLSGELARAKKQCEELVAFLRDSLKVCPDVIDRIIRQGTCGSSNDDAVRFDAIRDDDENAVVGECQQQQQQPPKGEESLKLFGVWLKGQNGKDIDKDKLKMGNGNCRKRGREDPIATTAKELKTLV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01970 289 Gene3D - 144 186 - -
Pumo4g01970 289 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 MobiDBLite consensus disorder prediction 104 137 - -
Pumo4g01970 289 Coils Coil 148 175 - -
Pumo4g01970 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 236 IPR027725 -
Pumo4g01970 289 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 Gene3D - 2 101 IPR036388 -
Pumo4g01970 289 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 MobiDBLite consensus disorder prediction 96 137 - -
Pumo4g01970 289 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g01970 289 FunFam Heat stress transcription factor B-4 2 100 - -
Pumo4g01970 289 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01970 Pumo-Chr4 26872708 26876190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01970 2 255 HSF AT4G36990 54.510 1.01e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo4g01970 HSF_DNA-bind 6.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01970 K09419 - gmx:100801897 400.208