Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01960 ATGTCGCCGGAGCAAGTGACCGGCGGCGAGTGCGACTCGCCGGCGGATATATGGGCCTTGGGATGTGCCGTTGTGGAGATGGTGACCGGGAAACCGGCGTGGCAGGTGGAGAAGGGGTCGAGCATGTGGTCGTTGTTGCTTCGAATTGGGGTGGGAGAAGAGGTTCCCGAGATCCCAAATAATTTGTCGAAAGAGGGAAAGGATTTTATTGAAAAGTGTTTTGTTAAGGATCCTAAGAAGAGGTGGAGCGCTGAAATGCTTTTGAAACATCCTTTTGTTGTTTCTGATGATGACGACACTGTTTCATTTAAGCGCGTTCATGAGTCACCGAGAAGCCACTTTGATTTCCCCGATTGGGTTTCGAGTGTTTCGGCTTCACTTCCCAGTTCGCCGGAATTTCAAGAAAAGTGGGATTTTGATGAGTCGTGTGTGGACGGTTTCTGTTCGCCAGGAGAACCGGCTCCGGCAGCTTTTGACGGTTAA 483 0.5072 MSPEQVTGGECDSPADIWALGCAVVEMVTGKPAWQVEKGSSMWSLLLRIGVGEEVPEIPNNLSKEGKDFIEKCFVKDPKKRWSAEMLLKHPFVVSDDDDTVSFKRVHESPRSHFDFPDWVSSVSASLPSSPEFQEKWDFDESCVDGFCSPGEPAPAAFDG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01960 160 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 112 - -
Pumo4g01960 160 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Pumo4g01960 160 Pfam Protein kinase domain 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01960 160 SUPERFAMILY Protein kinase-like (PK-like) 1 131 IPR011009 -
Pumo4g01960 160 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01960 Pumo-Chr4 26676810 26677292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01960 1 126 MAP Kinase Kinase Kinase AT5G67080 56.934 7.98e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo4g01960 Pkinase 4.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01960 - - gmx:100798607 266.159