Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01954 ATGAATCCTCAAGGTGACTCAGCTGGACAAAGTAATGCAAAGAACGAAAATGAAGTGATCCCTCGTTCACCATCTGAATCATTGGACATGCTTCCTTTATTTCCCCTCATTGATGAAGGAGAAAGATCCGTTGATACTTGTCCTCAACCACAACAAGGTGACATCAACAATTGTCCCAACACTGGTGTTCCTCTTTCTGTGAATCCAACTACAAATGCTGCACCAGAACATGCAATGCAACGCATGGCTGGAGGCACCTCAAACACGGTGCACTTACCAGCCAAGAGAAGTTCCCCTGACCATGCTTCTGGAGAATTTGCAGAAGGTGAAAGTTCGAACACTGGTGCACAAGCATCATTGGCCAAAAGGCGTGAAACCGAGTCTCGTGTTTCTCATGTAAGAGCAAACAACAACAACAACGTGAACCCGTCACCACCACCTCCTGTTATACAACAAGCGCACCAAGTCTTCAGTGAAGCTGAATACACTGAACCAATTCAAGTGGGTTTGTACCACAGCGGAGCCACTCAGCATAACCTTCAGCCACTTGGTTTCCATGGTAGACCATCATTCATAACCAACACTCCCTCCGTTGTTAACACCATTGGCCCGAGGACCATTCCTCATGCAATCATGCCTCCCTGTCCACATATTAGAGCCGATGCTATGGCTCCATTATATGGACAGGGGAGCCCTATGTTTGGTCAAGTTGAAACCTATGGACCAAATAGGTCATTCGATGAGAGACACGATGTTTTTGTGGGAAGAACTTCTTCTATTAATTTCCCCCAGCGGTTAGAGCCATTGGAACCAATGCCACCACTCTCTGGATTCATGGATGATAATGATAGAGTCAATAATGCTCAAGCAATTATGTTCCACCCTCCGAGTGAGCTAGCTGTCCCTTCAAATTCGAGACATTCACCGGGATCACGACAAATGAACTACTCTGATGGGGCAAGTAGTTCTAGAACACAGAACTATCATAATCAAGTGCAAATACCAGGATTTGGAGTTCCACCTTTTGTCAATTATGAACCCTCTTTGCTGCTTCCACCATATCCTTCTGCTGAAGTGAGAAGAAGGCTTCCATCTGATGTTCAGGATATCCTGGATGCTCTGCCTCTGCGCAGTGATCGACGCACTCCAATGTTGGAGGTATATTTTCACACAATTCAGAACTCGGAAGATTTTGATGCGTTGCAGCCACCCCGGCCGGGACTGAGTGTCAAAACGATCATGCAGCACCTAGAGCGTGAACCTTTCGTGTCTATTGTTGATACAGAAGCTCCAGAAGAAGACAAAGACAAATGCCCCATCTGTCTGGAAGAGTTTGAAGATGGAGATGAAATTGGGAAGTTGCACTCGTGTGTGCACAAGTTTCACGCCCATTGCATAAAACAATGGCTCATGTGTAAGAACTTTTGCCCAATCTGCAAACAAATTGGGTTGGAAATAAATGAAGCTGGACCATCAGCTGAAGTGATTAATATTGAAGATGACAGCGACAACGACAATGACAATGACAATGCTTAG 1536 0.4544 MNPQGDSAGQSNAKNENEVIPRSPSESLDMLPLFPLIDEGERSVDTCPQPQQGDINNCPNTGVPLSVNPTTNAAPEHAMQRMAGGTSNTVHLPAKRSSPDHASGEFAEGESSNTGAQASLAKRRETESRVSHVRANNNNNVNPSPPPPVIQQAHQVFSEAEYTEPIQVGLYHSGATQHNLQPLGFHGRPSFITNTPSVVNTIGPRTIPHAIMPPCPHIRADAMAPLYGQGSPMFGQVETYGPNRSFDERHDVFVGRTSSINFPQRLEPLEPMPPLSGFMDDNDRVNNAQAIMFHPPSELAVPSNSRHSPGSRQMNYSDGASSSRTQNYHNQVQIPGFGVPPFVNYEPSLLLPPYPSAEVRRRLPSDVQDILDALPLRSDRRTPMLEVYFHTIQNSEDFDALQPPRPGLSVKTIMQHLEREPFVSIVDTEAPEEDKDKCPICLEEFEDGDEIGKLHSCVHKFHAHCIKQWLMCKNFCPICKQIGLEINEAGPSAEVINIEDDSDNDNDNDNA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01954 511 MobiDBLite consensus disorder prediction 86 147 - -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 45 71 - -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 1 22 - -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 1 71 - -
Pumo4g01954 511 SUPERFAMILY RING/U-box 422 484 - -
Pumo4g01954 511 ProSiteProfiles Zinc finger RING-type profile. 438 480 IPR001841 -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 301 325 - -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 298 325 - -
Pumo4g01954 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 483 IPR013083 -
Pumo4g01954 511 MobiDBLite consensus disorder prediction 107 121 - -
Pumo4g01954 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 72 482 IPR045191 GO:0061630
Pumo4g01954 511 SMART ring_2 438 479 IPR001841 -
Pumo4g01954 511 Pfam Ring finger domain 436 480 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01954 Pumo-Chr4 26589123 26594802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01954 407 485 C3H Transcription Factor Family AT2G15530 40.000 1.20e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01954 - K10635 gsj:114392181 264.233