Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01952 ATGGAAGCCGTCCAACTCATCTCCACCACAACAATCAAGGCGTCGAGTCTCATTAACGATGACTCAGTTCAGAAAATCGATTTAACTCCCTGGGATCTCCAATTCCTCCAAATTGGAAGCATCCAAAGAGGACTTCTTTTTCGCAACGAGAAACACACACCAAACCAAATCCACCACCTCCAACACTCCCTTTCCTCCACTCTCGCCTTCTTTCCACTCCTCGCAGGCCGTCTCGCCATTCTCCAACATCACGACAACATCGTTTCGTCCCACATCGTATGCAACAACGCAGGAGCACTCTTTGTCCACGCCCTTGCACGCAACACCACTGTCGCTCACATCCTTCAACCCAAATATGTTCCTCCCATTCTCCGCTCCTTCTTTCCACTCAACGGCGTTAAAAACCACCAAGGCACGTCAAAGCCATTGCTGGCAGTGCAAGTGACGGAGCTACTTGACGGCATCTTCATCGCCCTCACAATCAACCACGTCGTCGGTGACGGCAAGTCGTTGTGGCATTTCGTCAATTCCTGGGCTGAAATCTCACGCGGCTCCCTTGAAATATCCAAACCTCCTGCTCTCCAACGTTACTTTCTGGATGGCGTCGACCGCCCCGTACTGTTTCCTTTTGCAAAGGAAGACCACTCCCAAAACCTTAAACCACAAACTCGATCTGTGAAGGTGTTCCACTTCACGAAGGAAAAAATTGCGGATCTGAAATCAAAAGCCAAAGCAGAGGCCAACACCGACAAAATATCTTCTCTGCAAGCGCTTTTAACTCACCTTTGGCGCTCTGTGGTTCGTTGCCAACACGTTGAGCCACATGAAGAGATTCACTATATGATGCCGGTTGGCGTTAGACCCAGGATGGTGCCAGCATTGCCAGAAGATTATTTTGGAAACGCAGCGCTGATTGGTCGTGTTAGCATGAAAGCTGGGGAACTGTTACAGAAGGGTGGGCTCGGAATGGGTGCTTTGGAGATGAACAAGATGATTTCTTTGCACTCTCATGAGAAGGTAAAGAACCACTATGAGTCTTGGGTGAGAACCCCGTGGCTGATAACGCTGCAGAGATGCGTGGCTGATAGTAATTTCTTGGCCGTTGGCAGTTCTCCGAGGTTCAACATTTACGGCAATGATTTTGGGTGGGGAAAGCCCGTGGCAGTTCGAAGTGGCGGTGACTTTAACCGAATGATTACTCTGTTTCCTGGTGCTGAAGAAGGTTCTATTGACATTGAAGTGTTCCTTCCTTATGAGATTTTGGAGGCCATGGGAAACGACCCTGAGTTCAGGCGTGTCTTTCTGAATGAATAA 1314 0.4909 MEAVQLISTTTIKASSLINDDSVQKIDLTPWDLQFLQIGSIQRGLLFRNEKHTPNQIHHLQHSLSSTLAFFPLLAGRLAILQHHDNIVSSHIVCNNAGALFVHALARNTTVAHILQPKYVPPILRSFFPLNGVKNHQGTSKPLLAVQVTELLDGIFIALTINHVVGDGKSLWHFVNSWAEISRGSLEISKPPALQRYFLDGVDRPVLFPFAKEDHSQNLKPQTRSVKVFHFTKEKIADLKSKAKAEANTDKISSLQALLTHLWRSVVRCQHVEPHEEIHYMMPVGVRPRMVPALPEDYFGNAALIGRVSMKAGELLQKGGLGMGALEMNKMISLHSHEKVKNHYESWVRTPWLITLQRCVADSNFLAVGSSPRFNIYGNDFGWGKPVAVRSGGDFNRMITLFPGAEEGSIDIEVFLPYEILEAMGNDPEFRRVFLNE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01952 437 Gene3D - 213 426 IPR023213 -
Pumo4g01952 437 Gene3D - 2 202 IPR023213 -
Pumo4g01952 437 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 430 - -
Pumo4g01952 437 Pfam Transferase family 4 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01952 Pumo-Chr4 26424702 26426212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01952 60 419 Monolignol Biosynthesis Gene Families AT5G48930 28.647 6.97e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01952 - - gmx:100794546 660.603