Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01950 ATGGAAGCCGTCCAAGTCATCTCCACCACCACAATCAAGGCAACGAGTCACAATAACGGTACCTCAGCTCAGAAAATCGATTTAACTCCCTGGGATCTCCTTTTCCTCCCAGTTGAAACCATTCAAAAAGGGCTTCTTTATCGCAACGAAAAACACACACCAATCCAAATCGAGCACCTCCAACACTCCCTTTCCTCCACTCTCGCCTTCTTTCCACTCCTCGCAGGTCGTCTCGCCATACTCCAACACGACGACAACACTGTCTCCTCCCACATCGTATGCAACAACGCAGGTGTCCTTTTTGTCCACGCCGTTGCACGCAACACCACTGTCGCTCACATCCTTCAACCCAAATACGTTCCTCCCATTGTCCACTCCTTCTTTCAACTCAACGGCGTTAAAAATCACCAAGGCACGTCACAGCCAGTGCTGGCAGTGCAAGTGACGGAGCTACTTGACGGCGTCTTCATCGCCTTCTCAATCAACCACGTCGTTGCAGACGGCAAGTCGTTTTGGCATTTCGTGAATTCCTGGGCTGAACTCTCACGCGGTTCCCTTAAAATATCCAAACTCCCTGCTTTCCAACGTTACTTCCCAGATGGCATTGACCGCGCCATACGGTTTCCTTTCACAAACGAAGAACTCTCCCAAAACCTCAAACCACAAACTCTACCCGAGAGGATCTTCCATTTCACAAAGCAAAAAATCTCGGAACTGAAATCAAAAGCCAACGCAGAGGCCAACACCGACAGAATATCTTCTCTGCAAGCGCTATTAACTCTCCTTTGGCGCTCTGTGATTCGTTGCCAGCATGTGGGGCCACGAGAAGAGGTTCATTATGTGCTGCTGATTGGCGTTAGACCCAGGATGGTTCCACCACTTGCAGAGGATTATTTCGGAAACGCAGCGCTGATTGGTCGTGTTACCATGAAAGCAGGGGAACTATTACAGGGTGGGGTCGGAAAGGGTGCTTTGGAGATGAACAAGGTGATTTCTTTGCATTCTCATGAGAAGTTGAAGGACCACTATGAGTCTTGGGTGAGAACCCCAAGGCTTTTAACGGTGAGTAGCGTGGCTTCTAGTAATTCCTTGGCCACTAGCAGTTCTCCAAGGTTCAACTTTTATGGTAATGATTTTGGGTGGGGAAAGCCCGTGGCAGTAAGAAGTGGCGGCGCAAATAAAAGTAACGGAAAGATTAGTGTGTTTGCTGGCATTGAAGAAGGTTCTATTGACATTGAAGTGTGCCTTCCTTATGAGATTTTGGAGGCAATGGGAAATGACCCTGAGCTCAATGATGCCATTTCCAACTAG 1311 0.4851 MEAVQVISTTTIKATSHNNGTSAQKIDLTPWDLLFLPVETIQKGLLYRNEKHTPIQIEHLQHSLSSTLAFFPLLAGRLAILQHDDNTVSSHIVCNNAGVLFVHAVARNTTVAHILQPKYVPPIVHSFFQLNGVKNHQGTSQPVLAVQVTELLDGVFIAFSINHVVADGKSFWHFVNSWAELSRGSLKISKLPAFQRYFPDGIDRAIRFPFTNEELSQNLKPQTLPERIFHFTKQKISELKSKANAEANTDRISSLQALLTLLWRSVIRCQHVGPREEVHYVLLIGVRPRMVPPLAEDYFGNAALIGRVTMKAGELLQGGVGKGALEMNKVISLHSHEKLKDHYESWVRTPRLLTVSSVASSNSLATSSSPRFNFYGNDFGWGKPVAVRSGGANKSNGKISVFAGIEEGSIDIEVCLPYEILEAMGNDPELNDAISN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01950 436 Pfam Transferase family 4 429 - -
Pumo4g01950 436 Gene3D - 2 205 IPR023213 -
Pumo4g01950 436 Gene3D - 214 426 IPR023213 -
Pumo4g01950 436 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01950 Pumo-Chr4 26391859 26393543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01950 60 419 Monolignol Biosynthesis Gene Families AT5G48930 26.596 1.82e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01950 - - gmx:100500257 693.345