Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01942 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCAATCGATGGGGATGATGATAACAACAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCGAGCTCCTCCGCGGTGGTCATCGAGGACGGATCAGAGGAGGAAGAGGTCGACGAGGAAGAAGAAGATGAAGAAGGTGGTGGTGGTGGTGGTGGCAGAAGAAGCATGAAGAAACGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAGGATGAAGAGTCCATGGACAGTGACCACCCACCTGTCACAAGACAGTTTTTTCCGGTGGAAGATGCTGACGTGGCGGTTGCATCCGGTGGTGGAGGCGGTGCAAGCTCTACGTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGCCAATCAGAAACACTTGGTGCTGGAAAATCATCAGTGGAAGTTTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCACGGAGTTCTCAGTATAGGGGAGTCACCTTCTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGAGGAGTAGAGGCTGACATAAACTTCAATATTGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTACACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGGAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAATACGTTTATTTGGGTCTCTTCGACACCGAGATTGAAGCTGCAAGGGCTTATGATAAAGCAGCCATAAAATGCAATGGCAAAGAGGCCGTAACCAATTTTGATCCCAGTATCTATGAGAATGAGCTTAATTCCGCAGAATCCACAGGTAACGCTGCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAAGTTCAAAGCCTGGCAATAATCCAGCGTTGGGGAATCACGCCACAAGTGCTGCAACCCATGATCAACACCTGCCATCTGAATCTAATTGGCGGAATGGGGGAAACAAGCCTAAGCTGGTGAATATACTACCAAAACCATGTAATAGAAGCAACAAGGAGGCAATTGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAATGAAATGCAAAGATATGGTCCCTACAGGTCTCCCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTACATTTTCCCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGGCCGATCAACAACAGTGGCAATCGGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAAGTTTCCAACAACAGATAAGACCCTCTTCTCAAGAGGCGTCATTGGTTAATGGATTGGTTGGGTTCAACGATTCTAGACTTAGCTTAATGGATGAAGAACTACCGTGGTCCAATGCAAGATTCCGTTATACAAACCCTCATGCGAGTAAGCTAAGAATCATAGTTGGCTCAGACATTGAGAGCCACTGCAGGATAGATGAACAAGAAGAGGTTCAGTGGTGGTCCAAAGATTTGATGCCATGGGCCTTGATTCTACGTAAAGAAAAGAAGAGAACAAAGCCAGTAAATTGCAGATACGAGTACAAAGTGAGACTCTGCAATTCAGTGCTCATATAG 1845 0.4672 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDDNNNNNKGKRVGSVSNSSSSAVVIEDGSEEEEVDEEEEDEEGGGGGGGRRSMKKRSSKIFGFSVTQDEESMDSDHPPVTRQFFPVEDADVAVASGGGGGASSTFPRAHWVGVKFCQSETLGAGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSAESTGNAADHNLDLSLGNSSSKPGNNPALGNHATSAATHDQHLPSESNWRNGGNKPKLVNILPKPCNRSNKEAIGRDVHGESEALRMLSQTHLHSPASNEMQRYGPYRSPGGESQMLQNFAHIHPPNLHFPSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSSFQQQIRPSSQEASLVNGLVGFNDSRLSLMDEELPWSNARFRYTNPHASKLRIIVGSDIESHCRIDEQEEVQWWSKDLMPWALILRKEKKRTKPVNCRYEYKVRLCNSVLI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01942 614 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g01942 614 MobiDBLite consensus disorder prediction 153 176 - -
Pumo4g01942 614 FunFam AP2-like ethylene-responsive transcription factor 175 234 - -
Pumo4g01942 614 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 427 - -
Pumo4g01942 614 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 MobiDBLite consensus disorder prediction 335 407 - -
Pumo4g01942 614 MobiDBLite consensus disorder prediction 55 72 - -
Pumo4g01942 614 MobiDBLite consensus disorder prediction 1 85 - -
Pumo4g01942 614 Gene3D AP2/ERF domain 267 326 IPR036955 GO:0003700|GO:0006355
Pumo4g01942 614 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Pumo4g01942 614 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 MobiDBLite consensus disorder prediction 335 389 - -
Pumo4g01942 614 FunFam AP2-like ethylene-responsive transcription factor 267 327 - -
Pumo4g01942 614 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Pumo4g01942 614 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Pumo4g01942 614 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Pumo4g01942 614 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01942 Pumo-Chr4 26322486 26329002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01942 1 356 AP2-EREBP Transcription Factor Family AT4G36920 66.216 1.74e-136 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo4g01942 AP2 4.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01942 K09284 - gmx:100792442 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01942 4 26322486 26329002 Pumo4g01942 4 26322486 26329002 ECH
Pumo8g01971 8 56342665 56346797 Pumo4g01942 4 26322486 26329002 PCT