Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01939 ATGGAAGAAGGTGAAGGAGGAAGCACGAGGAAGACAGGGAAAGAGGGTGAGGCCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAACGTTCTCGGATTTGGCTCGGTTCTTATTCCACGCCCGTCGCGGCGGCGCGTGCCTACGACACCGCCGTTTTCTATCTCCGGGGACCCTCCGCGCGTCTCAACTTCCCGGAACTTCTCGCCGTCGAGGGCCCCGCCGCCTCCGACATGTCCGCCGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCTAGAGTCGACGCGCTCCACCGCCAGCGCCCGCACGGGCCTCCCGCCGGAGAATTCGCCGACCGGGTCGACCTTAATAAGATACCCGAACCCGAGAGTTCGGATTGTGACTACTGGGACGGGGATTAG 438 0.6233 MEEGEGGSTRKTGKEGEATRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAVEGPAASDMSAASIRKKATEVGARVDALHRQRPHGPPAGEFADRVDLNKIPEPESSDCDYWDGD 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01939 145 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Pumo4g01939 145 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Pumo4g01939 145 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 MobiDBLite consensus disorder prediction 109 145 - -
Pumo4g01939 145 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Pumo4g01939 145 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 138 - -
Pumo4g01939 145 MobiDBLite consensus disorder prediction 109 137 - -
Pumo4g01939 145 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01939 Pumo-Chr4 26282956 26283940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01939 21 141 AP2-EREBP Transcription Factor Family AT5G67190 58.750 8.08e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01939 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01939 K09286 - gmx:100789373 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01939 4 26282956 26283940 Pumo4g01939 4 26282956 26283940 ECH
Pumo8g01973 8 56373080 56374337 Pumo4g01939 4 26282956 26283940 PCT