Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01931 ATGGCCGTGGACTTCATGACCACCGATTACAGGAGCGACAACGCTTTCACCACCAAAGCCGAGGAAAATGCCGTCCAAGAAGCCGCTTCTGGCTTAGAGAGCGTCGAGAAGCTCATCAGACTCCTCTCCCAAACTCGCCAACAATACAACCCCAACGAAATCGCCATGGACTGCAAAGCCGTCGCTGACGTCGCAGTTTCCAAGTTCGAAAAGGTCATTTCCCTCCTCGGCCGAACCCGAACCGAACCGGCCACGCCAGGTTCAGACGCGCCCCTCTCCCTCTCCCGACTCCTCCCCTCAACCAAACCCCCATCCGAACCACCGGTGTTCCACGCTACCCCTCTGCACCAGATCCCACCTTCCCTTCACCAAATCCCCAAAACTGAAAGAAACCTCAATGATTCTTCATCTTCTAAAACCATTCATTTCTCCTACCCCTCCGCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCGACAACAAACAACCCTCCTCCTCGTCGCCGCCGCAGGCGGCCACGCCCTTTCAGATCACGAGTCTCTCGCACGTGTCGTCCGCAGGGAAACCCCCGCTTTCGTCTTCCTCTTTCAAGAGAAAGTGCAGCTCTGAGAATTTAGGTTCTGGAAAGTGTGGCAGCTCATCTAGCCGTTGTCATTGTTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAGGGTAGTGAGGGTACCGGCGATAAGCTTGAAGATGTCTGATATTCCGCCAGATGATTATTCTTGGAGGAAGTATGGACAGAAACCAATTAAAGGATCACCTCATCCAAGGGGTTACTATAAGTGCAGTAGTGTTAGAGGGTGTCCAGCGCGTAAACATGTGGAACGAGCTTTGGATGATCCATCGATGCTGGTGGTTACTTACGAGGGGGAGCACAATCACACTCTCTCTGCGGCAGATGCTACTAGTCTTATTCTAGAATCGTCTTGA 963 0.5286 MAVDFMTTDYRSDNAFTTKAEENAVQEAASGLESVEKLIRLLSQTRQQYNPNEIAMDCKAVADVAVSKFEKVISLLGRTRTEPATPGSDAPLSLSRLLPSTKPPSEPPVFHATPLHQIPPSLHQIPKTERNLNDSSSSKTIHFSYPSAATSFISSLTADADNKQPSSSSPPQAATPFQITSLSHVSSAGKPPLSSSSFKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAADATSLILESS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01931 320 Gene3D WRKY domain 233 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g01931 320 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g01931 320 Pfam Plant zinc cluster domain 199 245 IPR018872 -
Pumo4g01931 320 MobiDBLite consensus disorder prediction 183 219 - -
Pumo4g01931 320 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g01931 320 FunFam WRKY transcription factor 65 231 308 - -
Pumo4g01931 320 SUPERFAMILY WRKY DNA-binding domain 245 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g01931 320 MobiDBLite consensus disorder prediction 80 121 - -
Pumo4g01931 320 MobiDBLite consensus disorder prediction 183 220 - -
Pumo4g01931 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 25 311 IPR044810 GO:0003700
Pumo4g01931 320 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01931 Pumo-Chr4 26176272 26178440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01931 1 305 WRKY Transcription Factor Family AT2G24570 44.000 9.58e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g01931 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01931 - - gmx:100170685 488.034