Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01882 ATGTGTAAATATCGCTATACGCACATTAAATATGCGCAGGAACCACCAGCACTACTTCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTATCCTGCGCATCCCCAATCACCTCATCGAAACTAACTCCATCATCACAATCCTTCACCAGATCTCGGGTTCCAATCGCCGAGCCATGTCGAAGGCGCGTGTCTACACCGATGTCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGAGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTCTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTAGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACACCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATACGAATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGA 1179 0.4224 MCKYRYTHIKYAQEPPALLLRFLLVCTLVALRAPVAQPPILRIPNHLIETNSIITILHQISGSNRRAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYESPGQANGKRSNGTSIFLSSKGS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01882 392 ProSiteProfiles Protein kinase domain profile. 101 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01882 392 PANTHER CASEIN KINASE II SUBUNIT ALPHA 63 371 IPR045216 GO:0004674|GO:0006468
Pumo4g01882 392 FunFam Casein kinase II subunit alpha 178 380 - -
Pumo4g01882 392 CDD STKc_CK2_alpha 82 369 IPR045216 GO:0004674|GO:0006468
Pumo4g01882 392 Gene3D Phosphorylase Kinase; domain 1 101 177 - -
Pumo4g01882 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Pumo4g01882 392 SUPERFAMILY Protein kinase-like (PK-like) 71 370 IPR011009 -
Pumo4g01882 392 FunFam Casein kinase II subunit alpha 87 177 - -
Pumo4g01882 392 Gene3D Transferase(Phosphotransferase) domain 1 178 370 - -
Pumo4g01882 392 SMART serkin_6 101 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01882 392 Pfam Protein kinase domain 101 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01882 392 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01882 Pumo-Chr4 25458553 25463947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01882 99 380 Core Cell Cycle Gene Families AT3G48750 31.000 3.97e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pumo4g01882 Pkinase 6.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01882 K03097 - gmx:100819679 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01882 4 25458553 25463947 Pumo4g01882 4 25458553 25463947 ECH