Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01874 ATGATGCTTCATTATATACCCGACGAAACCCTATCTGAAACAGACTTAACCTCTTATATCTACGATTCTTCTTCTTCTCTTGCTGCTTCTGCTGTTACTCCCACTTCCTCCCTACGATCGTTGTTCCTCAAGTCCCTGCGGGGTTTAGACCCAACGGTTGTGATCTTAGTCGATGAAGATGCGGATTTGACATCAAACAACTTGGTTTGCAGACTAAGATCCGCGTTTAACTACCTATGGATACCTTACGACACTGTGGACACAGAGTGGAAGCGAGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAATGCGAGCTTTCAAGGGGTGGGTTTCAGTGAGGACTCTGTTGCGGAGGTGAAGGGCATGCTGGATGAACATGCTGCTGGGTGGGGACTGAAGAAGGAAGATGAACACATTGTGCTCACTTGGAAGGGACACAATGTGGTCTTTGCTTCTGCTTGGTTACCTGCTTGA 480 0.4771 MMLHYIPDETLSETDLTSYIYDSSSSLAASAVTPTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTEWKRVEPKNRWEQRMKNASFQGVGFSEDSVAEVKGMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01874 159 Pfam GRAS domain family 91 156 IPR005202 -
Pumo4g01874 159 Pfam GRAS domain family 34 90 IPR005202 -
Pumo4g01874 159 ProSiteProfiles GRAS family profile. 1 157 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01874 Pumo-Chr4 25366746 25367316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01874 1 158 GRAS Transcription Factor Family AT3G49950 47.594 2.71e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo4g01874 GRAS 3.1e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01874 - - gmx:100808898 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01874 4 25366746 25367316 Pumo4g01874 4 25366746 25367316 ECH