Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01872 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGATGCAGCGAGTCCTGTATGTTGCGCCCTTGTTTGCAGTGGATCGAGACCGCCGAAGCTCAAGGCCACGCCACTGTCTTTGTTGCCAAATTCTTTGGCCGTGCTGGCCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCGCTGCTGTTCGAAGCGTGCGGGAGAACGGTGAACCCCGTGAACGGTGCTGTGGGACTTCTCTGGACCGGAAACTGGCATGTGTGCCAGGCGGCGGTGGAGACGGTGCTCCGCGGCGGCACGCTGAGGCCCATGCCCGAGCTCATGGGTCTCGATGCTCCCGCTGCCGCCACCGATGAAGCATCGGAGGCGGAAGTCGCCTGCACAGACACGTGGAGGATCCGAGACCCGAACCCGAATTGCCGGTTCACGAGCTCGCGATCTCATAATAAGGTCTCCTCCGGCGGCAAACGCAAGCGGTCGGAGGAGCTTACAAAGCTTCAGGCAGCGCCGAATCTTGATCTCCGGCTGACGCCGATTTTCTTGCAGAAGGTTGAGAGTCGCCGGCCGGAGTCTCCCTCGATGACTTCCGAGGAGTCCGGCACGACAACGGCCTGTTTGGAGAACAGATTTGGGGACAACAGAGACAGGAGAGTTCTCAACCTTTTCATTTGA 690 0.5841 MSCNGCRVLRKGCSESCMLRPCLQWIETAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLDAPAAATDEASEAEVACTDTWRIRDPNPNCRFTSSRSHNKVSSGGKRKRSEELTKLQAAPNLDLRLTPIFLQKVESRRPESPSMTSEESGTTTACLENRFGDNRDRRVLNLFI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01872 229 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pumo4g01872 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 215 - -
Pumo4g01872 229 MobiDBLite consensus disorder prediction 190 209 - -
Pumo4g01872 229 MobiDBLite consensus disorder prediction 144 168 - -
Pumo4g01872 229 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01872 Pumo-Chr4 25334034 25335388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01872 1 228 AS2 family AT3G49940 56.972 1.28e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g01872 LOB 1.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02021 8 57028459 57029869 Pumo4g01872 4 25334034 25335388 ECH
Pumo4g01872 4 25334034 25335388 Pumo4g01872 4 25334034 25335388 ECH
Pumo4g01872 4 25334034 25335388 Pumo8g02021 8 57028459 57029869 PCT