Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01870 ATGGCCCTAAGGCCCTTCCAATTCAACTTCTTCTCGCGCGATAGATTGCTCTTTCTCCTCCGCTCTTCTCTTTCCCATTCCTTTCCCTCTCCTCTCCGCCCCCTCAACTTTCCCCAAACCTCTCCTCCCGCTTTCTCCTTCCGCCACTTCGCCGCCGCCCCCCTCGCTCGCCCTCCGCCGCCGCCACCTCTCGACGCCATGGCGCAGAAAATCGGAAAGTCCACGCGCCGCCCCGGCGCGTCCTCCAAGGCCAGGGTCTACGCCGATGTCAACGTTGTTCGCCCCAAGGAATATTGGGACTACGAGTCACTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTCTTCGAAGGTGTTCACTGCACGGACGGTGAGAAATGTGTAATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCAAGTCTTATATTTGAATACGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTATGATATACGATATTATATTTATGAACTTCTGAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCACATAATGTAATGATTGATCACGAGCAGCGTAAGCTTCGCCTCATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTATTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCCAAGGTACTTGGGACAGATGAATTAAGTGCATATTTAGATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAGGCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACTTGGCTGTTCCTGAGGCCGTTGACTTTGTCGACAAGTTGCTATGCTATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTTAGAAACGCAGAAAGTAGTAGAACTCGTGCACATTGA 1242 0.4646 MALRPFQFNFFSRDRLLFLLRSSLSHSFPSPLRPLNFPQTSPPAFSFRHFAAAPLARPPPPPPLDAMAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLDKYRIELDPHLAALIGRHSRKPWAKFINVENHHLAVPEAVDFVDKLLCYDHQERPTAKEAMAHPYFNPVRNAESSRTRAH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01870 413 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01870 413 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Pumo4g01870 413 Gene3D Transferase(Phosphotransferase) domain 1 191 399 - -
Pumo4g01870 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Pumo4g01870 413 CDD STKc_CK2_alpha 95 399 IPR045216 GO:0004674|GO:0006468
Pumo4g01870 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA 78 408 IPR045216 GO:0004674|GO:0006468
Pumo4g01870 413 Pfam Protein kinase domain 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01870 413 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Pumo4g01870 413 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01870 413 SUPERFAMILY Protein kinase-like (PK-like) 86 403 IPR011009 -
Pumo4g01870 413 FunFam Casein kinase II subunit alpha 191 402 - -
Pumo4g01870 413 FunFam Casein kinase II subunit alpha 100 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01870 Pumo-Chr4 25306065 25313004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01870 112 399 Core Cell Cycle Gene Families AT3G48750 33.000 3.76e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pumo4g01870 Pkinase 7.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01870 K03097 - gmx:100776388 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01870 4 25306065 25313004 Pumo4g01870 4 25306065 25313004 ECH