Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01853 ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTAAAACATGGGGCGGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCGCACACGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACCACCGCCCAAAATTGACAATAACCATATGGCCTTGAGTACAGTAGTTCGACATGATGAAGTTCTTGATACTAAGCCCTTAGCAGTTTCTGGTGGACCAATGCAATCCCCCAATGTGAAAGAACAAATATCAAGGTTGGTAGATAATCATATATTAGAGGCCATTGTCAACATGAAGGGGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCTCCACCAAATCTCAGTAAATTACTGTCAATCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAACCAAGGAAAAGCATAAGTACAGGATTGCACCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGATACTTTTGGAAGGGAGGCCCAAAGATCCTTCAGGAGCATATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGTTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCCCAGGCTGAGGCTGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 891 0.4444 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPMQSPNVKEQISRLVDNHILEAIVNMKGQKGSDKAAIASFIEEKYRSPPNLSKLLSIKLKHMVASGKITKEKHKYRIAPSSTVSEKRRCSSLILLEGRPKDPSGAYKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01853 296 FunFam Telomere repeat-binding factor 1 2 58 - -
Pumo4g01853 296 Gene3D - 2 59 - -
Pumo4g01853 296 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Pumo4g01853 296 SMART sant 4 59 IPR001005 -
Pumo4g01853 296 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Pumo4g01853 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pumo4g01853 296 CDD SANT_TRF 6 57 - -
Pumo4g01853 296 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo4g01853 296 Coils Coil 243 280 - -
Pumo4g01853 296 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo4g01853 296 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Pumo4g01853 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pumo4g01853 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pumo4g01853 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo4g01853 296 Gene3D - 113 218 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01853 Pumo-Chr4 25113549 25118534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01853 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 54.485 6.78e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g01853 Linker_histone 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01853 K09422 - gmx:100779583 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02044 8 57293022 57296393 Pumo4g01853 4 25113549 25118534 PCT