Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01848 ATGTCTTTCGACTCCTCATCAAACCACCCAAGTCCTGACTTGTACTGCAGTGAAGTAACTAGCGAAGTGATTCACTTGGATTCCGATGAGGCTTTGAAGTTGAATGTTCTATGGGGAGACTCTCATGATCATCATGATAGTGATGAAAGCATTCTATTGAGCTTATTAGAATCCGAACATGACCAAGTACAGGAACAAACAAACTCCCTAGGACAACTTCGCAAAAAAACATGGCTGATTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAAACCCGAGACAGCATATCTTTCTGTAAATTACTTCGATCGCTTCCTCTTGTCACACACCTTGATGCAAGATAAAGCATGGCCTATGCAGCTGTTATCAGTGGCTTGTCTTGCTCTAGCAGCAAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTGCAAGTGATTAAGTCCAGTTTCCTGTTTAAGCCCAAAACAGTTCAGAGGATGGAGCTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCACTATAACCCCTTTTGATTTTGTCCATCTTTTCATTTCCAAGAATTCATGCTCTGCTTCCACATGGGGAGATTTAAGTTACATTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTTTAGTCATAGATTTCTTGGAGTTTTCACCATCCACAATAGCAGCAGCTGCACTGTTATGGGTAACCAATCAATGTGTAGATGACCAAAAATCAGATTGCTTCCACAAGAATATAAGCATTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACTAATCATTAGCCGATCAGAACTTTATTGGCCAAAGGCTTCACAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCATGCAGCTATGCAAGAAGAAAACAGCGATGCTCACAAGCTCTGA 951 0.4132 MSFDSSSNHPSPDLYCSEVTSEVIHLDSDEALKLNVLWGDSHDHHDSDESILLSLLESEHDQVQEQTNSLGQLRKKTWLINAREEAINWILKVHAYYSFKPETAYLSVNYFDRFLLSHTLMQDKAWPMQLLSVACLALAAKMEETKVPLLLDLQVIKSSFLFKPKTVQRMELLVMASLKWRLRTITPFDFVHLFISKNSCSASTWGDLSYIVSRVSDVIIRTCLVIDFLEFSPSTIAAAALLWVTNQCVDDQKSDCFHKNISIEMVQKCYKLMKQKLIISRSELYWPKASQLLPRSPTCVLDHAAMQEENSDAHKL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01848 316 Gene3D - 66 183 - -
Pumo4g01848 316 SUPERFAMILY Cyclin-like 42 182 IPR036915 -
Pumo4g01848 316 FunFam D6-type cyclin 66 179 - -
Pumo4g01848 316 CDD CYCLIN_AtCycD-like_rpt2 185 273 - -
Pumo4g01848 316 FunFam D6-type cyclin 180 271 - -
Pumo4g01848 316 Pfam Cyclin, N-terminal domain 54 182 IPR006671 -
Pumo4g01848 316 CDD CYCLIN_AtCycD-like_rpt1 82 180 - -
Pumo4g01848 316 Coils Coil 56 76 - -
Pumo4g01848 316 SMART Cyclin_C_2 185 310 IPR004367 -
Pumo4g01848 316 Pfam Cyclin, C-terminal domain 185 277 IPR004367 -
Pumo4g01848 316 PANTHER CYCLINS 46 275 IPR039361 -
Pumo4g01848 316 Gene3D - 54 270 - -
Pumo4g01848 316 SUPERFAMILY Cyclin-like 167 279 IPR036915 -
Pumo4g01848 316 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Pumo4g01848 316 SMART cyclin_7 88 176 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01848 Pumo-Chr4 25045268 25046595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01848 70 288 Core Cell Cycle Gene Families AT1G70210 44.690 9.79e-59 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01848 K18810 - gmx:100781193 533.872