Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01843 ATGAACAGATTTCTCATTGCAGTGATTGTTTTTGGTTTTCTGGGTTCTCTCCAAAGCTGGTTCCTTTTTCTCAAAGGGGTTTCGAAAATGCCAATGTTGGAGCCTCCTTGTAAGAGGGATGGAGTTGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGTGGTGTGGATTCTGGGGTTGTGGGAACTGGGGTCGGTGAAAAATTGGATCTTGGGACAATGATTGAAGAGTTGGACTTGTGTGATGTTCCCTCTGTGTTCATTTGTCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACCCTTTGCACTGGCCAGACCTATGAGAGGTCCAACATTCTCAAATGGTTCAGTTTGGGCCACTTCACTTGCCCCACCACAATGCAAGAGCTCTGGGATGATTCCCTCACTCCAAACACCACCCTCTACCGTTTGATATCCACTTGGTTTTCTCAAAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTGCAGGGGAGGGTGTTGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCTCGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCATGCCACTGCCCGCAAGGCATTGGTTGATGGTGGTGGAGTCTCTGTGGTGTCATCGTTGCTCGGTCCTTTCACTTCCCATGCCGTTGGTGCTGAGGTCATCGGTGTTCTTGTGAGTTTGAACCTTGATTGTGAGTCCAAGAGGAATCTAGTGCAGCCTGCAAAGGTTTCATTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACAAAGATCAATTGCACACGGTTGATTGAGAAACTGATTGAAGAGAAGAATTTCCAGTTGGAGATTTTCAGGAGCCATAGCCTTTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGGCACACAAATGGAATCTGCCCTGGACTGAGGCTTCTCAGAACAGTGTGCTTGCATTCAGAAGTCAAGAGTTTGCTGGTGAGCGTTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCATGATTGTTTGGAATTGGCTCTTTCAATTTTGGATGCATTAGCATCTGTCCCTGAAGGGAGATTAGCTTTGAAGGGTTGTTCTAACACCATACCTGTTATGGTGAAACTGTTGATGAGGGTCTCAGAGAACTGCACTCAATATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTTGCACCTGAGGAGTGCTCTTTGATTGCTGTGGAAGCAGGACTTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATACTGAAACAACAATCCGCTGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAAAACAATCCAATGA 1419 0.4637 MNRFLIAVIVFGFLGSLQSWFLFLKGVSKMPMLEPPCKRDGVEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGTMIEELDLCDVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSLTPNTTLYRLISTWFSQKYLVMKKRSEDVQGRVLELVETLKKVKGQARVLALKELHQVVAAHATARKALVDGGGVSVVSSLLGPFTSHAVGAEVIGVLVSLNLDCESKRNLVQPAKVSLMVDILNEGSIETKINCTRLIEKLIEEKNFQLEIFRSHSLLVGLMRLVKDKRHTNGICPGLRLLRTVCLHSEVKSLLVSVGAVSQLVELLSGLEHDCLELALSILDALASVPEGRLALKGCSNTIPVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTKTIQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01843 472 Pfam U-box domain 88 158 IPR003613 GO:0004842|GO:0016567
Pumo4g01843 472 Gene3D - 162 467 IPR011989 -
Pumo4g01843 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Pumo4g01843 472 PANTHER WDSAM1 PROTEIN 82 458 IPR045185 GO:0061630
Pumo4g01843 472 CDD RING-Ubox_PUB 89 141 IPR045210 -
Pumo4g01843 472 SUPERFAMILY RING/U-box 82 158 - -
Pumo4g01843 472 SUPERFAMILY ARM repeat 176 458 IPR016024 -
Pumo4g01843 472 ProSiteProfiles U-box domain profile. 87 161 IPR003613 GO:0004842|GO:0016567
Pumo4g01843 472 SMART Ubox_2 91 154 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01843 Pumo-Chr4 24994662 24997399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01843 30 472 U-box Gene Family AT3G49810 71.333 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01843 - - gmx:100781741 770