Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01832 ATGAAGAGCATGGAAAATGATGACACTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAATATAGGAGTTCCTTCACACACACAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACACTGCTCCACTTAATAACTATGGCTTCTACTATGGACTTGAAGCTGAAAGTGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTTTGAGCAGGTCACAAGCACAAGCTATGGCTACTACTTCAACACCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGCAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTGTTTTACAACCAACCCTCACGCCGTGACCCAAATAACCAAACTTACCAAAACCATGTCCAACACATTAGCACCCAACAACAACAGCAGCAGCAGCAAGAACTTCAAGCCCAACACTTGTCATATTACTCTACCTTGAGAAACCATGACATGATGTTAGAAGGGTCCAAGCAAAGCCAAACTTCAGATAGCAATCTTCAGGTTCCAAACATGGGTGATGATGGAGTTCCTGTTCCTGGCCTTAAGAGTTGGGGAGTAAGAAACTTCCAAGCTAGCCATGCACAGGAGACAAAGATGATTGTTCCTGTGGGGGAAAATGGTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAATCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGCTGTGTTACAAGCTCACACTGCGCATCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACAGAGAGACAGACAATGGAACTCAGTATATTGATCATAATCATAAGCCATCTGCATATGAGGACACTCAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGCCAAAATGATCAGTGGAAGATGGTTCTCTACCAATCCTCTCAACAACTTGACCAGAATCCACCAAGAATTGAGAGTGACAGAACTAACCAACCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAGGAAGTAGAGGAATCAAGTAAGGTGAGAACGCATGTGTCAAACCCCTCCTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCATCAAAACTATTGGCTACCAATCCAAATAGTAACCTCAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCACTTAATTTGCCTCAAATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1989 0.4419 MKSMENDDTVDLNNQNNWLGFSLSPQMNIGVPSHTQPSSAAEVVPTSFYHTAPLNNYGFYYGLEAESVGLYSALPIMPLKSDGSLYGMEALSRSQAQAMATTSTPKLENFLGGEAMGTPHYECSATETMPLSLDSVFYNQPSRRDPNNQTYQNHVQHISTQQQQQQQQELQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQVPNMGDDGVPVPGLKSWGVRNFQASHAQETKMIVPVGENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHCASPAVIDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDNGTQYIDHNHKPSAYEDTQEAILMQKSCESQNDQWKMVLYQSSQQLDQNPPRIESDRTNQPFSVALDNMFHQEVEESSKVRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNSNLNVNSWDPSPHLRPALNLPQMPVFAAWTDA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01832 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 556 - -
Pumo4g01832 662 SUPERFAMILY DNA-binding domain 416 477 IPR016177 GO:0003677
Pumo4g01832 662 CDD AP2 317 381 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 Gene3D AP2/ERF domain 417 478 IPR036955 GO:0003700|GO:0006355
Pumo4g01832 662 Gene3D AP2/ERF domain 317 383 IPR036955 GO:0003700|GO:0006355
Pumo4g01832 662 SMART rav1_2 417 482 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 SMART rav1_2 318 387 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 ProSiteProfiles AP2/ERF domain profile. 417 476 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 MobiDBLite consensus disorder prediction 581 628 - -
Pumo4g01832 662 Coils Coil 382 402 - -
Pumo4g01832 662 ProSiteProfiles AP2/ERF domain profile. 318 381 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 MobiDBLite consensus disorder prediction 585 628 - -
Pumo4g01832 662 FunFam AP2-like ethylene-responsive transcription factor ANT 317 383 - -
Pumo4g01832 662 FunFam AP2-like ethylene-responsive transcription factor 416 478 - -
Pumo4g01832 662 CDD AP2 416 478 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 PRINTS Ethylene responsive element binding protein signature 458 478 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 PRINTS Ethylene responsive element binding protein signature 319 330 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 Pfam AP2 domain 418 468 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 Pfam AP2 domain 318 373 IPR001471 GO:0003700|GO:0006355
Pumo4g01832 662 SUPERFAMILY DNA-binding domain 317 383 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01832 Pumo-Chr4 24863960 24868210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01832 398 662 AP2-EREBP Transcription Factor Family AT4G37750 25.081 2.52e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo4g01832 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01832 K09285 - gmx:100787611 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02057 8 57433347 57436978 Pumo4g01832 4 24863960 24868210 PCT