Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01829 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAATGTCAAGAGAGGTCCATGGTCGCCTGAAGAAGACACCAAACTCAAATCTTACATTGAAGAGCATGGCACTGGTGGCAACTGGATAGCCTTGCCCCAAAAAATAGGCCTCAAAAGGTGTGGGAAAAGCTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACACGGAGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTACCATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCAGGGCGCACAGATAATGATATAAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTACTAGGGAAGCAAAGGAAGGAGCAACAGGCTCAAGCTCGCAAAGTTTGTAGCCTAAAGCAAGAGATCAAGAGAGAAAGTGAAGATTTGATGTTACCTGTTGGAGTTATTACCCGAACTCCTTATTGGCCTCATGAACAGCATTCATGGCCCATTCCAGTTGCAAATGCTTCCATCCAATACTCCGATCTCAACATTAATCAAACATCATCAATCAGAAACTTCCCTAACAACATAGTCACTGCCACCATGAACTCGCAACACACATCATGTGACATTTCTTTCACACAAGACCAGCTATTTCCCTCCACGATGAACATGGTAACAGCCACGGACACGTGTCACACATCAAACGTATTTCAAGGGTTTGGGAACTTTTCCAGTGATTTGGCCTGTGTGAACCCGCAACAAATAGATGGATCAATGCGGGTTTTTTATGGATTGGAAACAACCATGGAGGTGGCAAATGGTAGCACAAACACGACTTCAACAGAAAGCACTAGTTGGGGAGATATAAGCTCTTTGGTTTACTCGCCTTTGGTTTCTGACTACGAAGCTTGCCAACAAACAATAATACCTCAAGATGTTACTTTCGAGGACTCTAGTTACTTTGCAATGCAAACGCAATAA 978 0.4387 MGRAPCCDKANVKRGPWSPEEDTKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQARKVCSLKQEIKRESEDLMLPVGVITRTPYWPHEQHSWPIPVANASIQYSDLNINQTSSIRNFPNNIVTATMNSQHTSCDISFTQDQLFPSTMNMVTATDTCHTSNVFQGFGNFSSDLACVNPQQIDGSMRVFYGLETTMEVANGSTNTTSTESTSWGDISSLVYSPLVSDYEACQQTIIPQDVTFEDSSYFAMQTQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01829 325 Gene3D - 7 68 - -
Pumo4g01829 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo4g01829 325 FunFam Transcription factor RAX3 70 145 - -
Pumo4g01829 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo4g01829 325 SMART sant 13 64 IPR001005 -
Pumo4g01829 325 SMART sant 67 115 IPR001005 -
Pumo4g01829 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo4g01829 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo4g01829 325 CDD SANT 71 111 IPR001005 -
Pumo4g01829 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo4g01829 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo4g01829 325 CDD SANT 16 62 IPR001005 -
Pumo4g01829 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo4g01829 325 FunFam Transcription factor RAX3 7 68 - -
Pumo4g01829 325 Gene3D - 70 144 - -
Pumo4g01829 325 PANTHER OS09G0431300 PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01829 Pumo-Chr4 24673718 24675434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01829 1 294 MYB Transcription Factor Family AT3G49690 49.848 2.11e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01829 Myb_DNA-binding 7.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02060 8 57501717 57503542 Pumo4g01829 4 24673718 24675434 PCT