Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01823 ATGGGTCTTGATCAGGATGCTACCACCAATTCTGGCCTTCACCTTATTCTAGGTTTAGCTTTGACTTCCACCACCCCACAAAACTCCATCACTCCATCACCACCAACATCATCCATTTCCAACAAGCTTGATCATGTTGATCATCACCACCATCTCATAACTCTTAGGCCAAAGTCATCCTATACTAATAAATCCGAGGCTGAGCCATCATTAACGTTGGGTCTGTCCCGTGATCAGAGTTACCTCAAAGTCCCCAAAAACATAGGACACAACAACAACAACAAAGTCTCATCCTGTGATGACCCTCTTGACTTGTCCACACAGACTTCACCTCACAGTGCTGTTTCCTCCTTCTCCAGTGGCAGGGTTAAGAGGGAGAGGGATCTTAGCTGGGAAGAAGTGGATGCAACAGAGATAGATCAGAGGGATCTTAGCTGTGAAGGAATAATAAGAGCCACTGATGAAGAAGAAGACGGCACCGGCGCCAGAAAGAAACTTAGGCTTACAAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACATCATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCGAAGCAGTTAAATCTAAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAACAGACGGTTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGCCCCTCTTGCGAGAGGCTCGGCGGCGGCGTCAACGGTGGCGGTTCTCCTAAGACACCATTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 930 0.4796 MGLDQDATTNSGLHLILGLALTSTTPQNSITPSPPTSSISNKLDHVDHHHHLITLRPKSSYTNKSEAEPSLTLGLSRDQSYLKVPKNIGHNNNNKVSSCDDPLDLSTQTSPHSAVSSFSSGRVKRERDLSWEEVDATEIDQRDLSCEGIIRATDEEEDGTGARKKLRLTKEQSALLEESFKHHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGVNGGGSPKTPFSMAPKPHFFNPFANPSAAC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01823 309 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Pumo4g01823 309 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Pumo4g01823 309 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Pumo4g01823 309 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Pumo4g01823 309 Gene3D - 157 224 - -
Pumo4g01823 309 MobiDBLite consensus disorder prediction 53 122 - -
Pumo4g01823 309 MobiDBLite consensus disorder prediction 85 120 - -
Pumo4g01823 309 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Pumo4g01823 309 Coils Coil 225 255 - -
Pumo4g01823 309 FunFam Homeobox-leucine zipper protein 18 151 224 - -
Pumo4g01823 309 MobiDBLite consensus disorder prediction 56 77 - -
Pumo4g01823 309 CDD homeodomain 163 220 IPR001356 GO:0003677
Pumo4g01823 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 51 281 - -
Pumo4g01823 309 SMART HOX_1 161 223 IPR001356 GO:0003677
Pumo4g01823 309 SUPERFAMILY Homeodomain-like 161 227 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01823 Pumo-Chr4 24583705 24585050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01823 1 309 Homeobox Transcription Factor Family AT4G37790 56.467 2.46e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g01823 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01823 K09338 - gmx:100807123 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02062 8 57530969 57532991 Pumo4g01823 4 24583705 24585050 PCT