Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01812 ATGATGCAAATTTCGTCAACCATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCTTCTGCATTATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGAACTCTTCCTCTCACAAGCGATTCAACTCCGAAAGCACACAAAACTCTTCTCTCACTCAAAGTCCTGAAAATTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTGTGAGCACTACTTGGAATGCTTACAACAGCACTGACGTGATGGCTCCCATTAAGGCTTCTTCTTCTTCGTCCTCCAAAATCATCTCTTTTGAGCACTCCAATGCGTCTTCGGTTACTTCCCAACAATTCTACAACGTGGATGCTACTGCTGCCAAAATGAAGAAGCCTAAGATTGAAACCGGGTATGGTGAAAACTTGGATTTTGCAGCTGCGGCTTCTCAAAGCGTCTATGACAACAACAGTTTTCTAGACTATAATCAACGAGAGAAAAAGGCTGCAGCTTCAACGGCTAGAAACCCTACCCAAGCTCAAGATCATGTATTAGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAGAGGTTCATTGCTCTTTCTGCCATAGTTCCTGGACTCAAAAAGATGGACAAGGCTACCGTCTTGGAAGATGCTATAAAGTACGTGAAACAACTGCAGGAACGGGTAAAAACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCCGTATTTGTGAAGAGATCTGTTGTTTTTGCCGGCGATGGTAGCTCCTCCTCCGTTGAAAACTCCGACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCCGGTAAAGAGGTACTCATCAGAATCCACTGCGACAAACACAGTGGAGGAGCGGCTGCTATACTAAGGGAATTGGAGAAGCATCATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTTGGAAATAACACTCTTGACATAACTATTGTTACTAAGATGAACAAGGACTACTGCTTGACTGCAAAGGATCTCATAAGAAGCTTAAGTCAGTGTTTGAGGCAGCATTCATCGTGA 1089 0.4454 MMQISSTMYMPEFGMEDPTLFHQYPMDSSALFQLDDFDFESFSASPKNSSSHKRFNSESTQNSSLTQSPENSVAPPRPTKQPKTVSTTWNAYNSTDVMAPIKASSSSSSKIISFEHSNASSVTSQQFYNVDATAAKMKKPKIETGYGENLDFAAAASQSVYDNNSFLDYNQREKKAAASTARNPTQAQDHVLAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGDGSSSSVENSDQSLPEIEARISGKEVLIRIHCDKHSGGAAAILRELEKHHLTVQSSSFLPFGNNTLDITIVTKMNKDYCLTAKDLIRSLSQCLRQHSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01812 362 SMART finulus 191 240 IPR011598 GO:0046983
Pumo4g01812 362 CDD bHLH_AtNAI1_like 187 259 - -
Pumo4g01812 362 PANTHER BHLH TRANSCRIPTION FACTOR 24 360 - -
Pumo4g01812 362 Gene3D - 176 249 IPR036638 GO:0046983
Pumo4g01812 362 FunFam Basic helix-loop-helix family protein 182 251 - -
Pumo4g01812 362 Pfam Helix-loop-helix DNA-binding domain 188 235 IPR011598 GO:0046983
Pumo4g01812 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 245 IPR036638 GO:0046983
Pumo4g01812 362 MobiDBLite consensus disorder prediction 43 88 - -
Pumo4g01812 362 Coils Coil 224 251 - -
Pumo4g01812 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01812 Pumo-Chr4 24435586 24438703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01812 168 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.795 7.44e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01812 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01812 - - gmx:100798011 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01812 4 24435586 24438703 Pumo4g01812 4 24435586 24438703 ECH
Pumo8g02075 8 57653679 57656367 Pumo4g01812 4 24435586 24438703 PCT