Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01811 ATGACATCAATGGAGGAATCATGGACTAGTTGGCTGTGCGATATGGAACCAGATGATTACAGTTTCATCGGTCAATCAGACATAAAGGTGGATGATGTGAATGGAAGCTTAGCATCTCACCATGATATAGCTACTACATTAGAGGAGAGTCACTCTTCAGTGACTGAGAGTGGCTTAGAAAGGCCTCTCAAGTTACTCAAAACATGCACTTCAAACTCTGCCAAGACAGAACAACTCTCACAAAAGATGGCTTCTTCTTCTTCTCCCAGCTCCTACATTCTCTCCTTTGACAACACAAATCTTCCACCAGTTAAGGTTGAATCAGCCTCGAAGCCAGGAACCAAGGTTGTGAATCGTGAGAAAGCTTTGCCTTCAAAGAATGAACCAAGACGCGTTACTCAAGAGAGCAGAAAAATGGGCTCATTGGCCAGATCTTCTCATCACACACAAGATCACATTATTGCTGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATTGCCCTTTCTGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTGTTGGGGGAGGCTATAAGGTATGTGAAACAGATGAAGGAGCAAGTGAAGCTGCTGGAGGAGCAGAGCAAAAGTAAAAACGAGGAATCAGTGGTGTTTGCAAAGAAATTTCAGGTCTGTGTTGCGGACGAGGATGTCTCAGGACACTTCATCAAACTCCTGTGA 717 0.4421 MTSMEESWTSWLCDMEPDDYSFIGQSDIKVDDVNGSLASHHDIATTLEESHSSVTESGLERPLKLLKTCTSNSAKTEQLSQKMASSSSPSSYILSFDNTNLPPVKVESASKPGTKVVNREKALPSKNEPRRVTQESRKMGSLARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVKQMKEQVKLLEEQSKSKNEESVVFAKKFQVCVADEDVSGHFIKLL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01811 238 Gene3D - 148 224 IPR036638 GO:0046983
Pumo4g01811 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 212 IPR036638 GO:0046983
Pumo4g01811 238 MobiDBLite consensus disorder prediction 121 150 - -
Pumo4g01811 238 MobiDBLite consensus disorder prediction 118 150 - -
Pumo4g01811 238 Coils Coil 186 213 - -
Pumo4g01811 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Pumo4g01811 238 PANTHER BHLH TRANSCRIPTION FACTOR 50 227 - -
Pumo4g01811 238 SMART finulus 153 202 IPR011598 GO:0046983
Pumo4g01811 238 Pfam Helix-loop-helix DNA-binding domain 151 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01811 Pumo-Chr4 24383179 24385215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01811 9 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 40.708 4.07e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01811 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01811 - - gmx:100803386 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01811 4 24383179 24385215 Pumo4g01811 4 24383179 24385215 ECH
Pumo8g02077 8 57703192 57705350 Pumo4g01811 4 24383179 24385215 PCT