Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01810 ATGATGGAGGAATTAAACAAACCAATGGACGGATCAGCAGCCAGCTGGTTATCCGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCTTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTTTCACAAGACATTGCTAGTGCCCTTGAGGAACAGACACTGACCTTACAAGAATCTTTGTCTTCAGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAACCAAGTTGCTGAAAACGACAACAAGCAGTAGTTGTAACGCTGACTCATCCACCATCACTAAAACCCTTTCACCAAAACTTTCCCCATCATCATCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACCCAAACTCATCATCATCCCCTCCCAACACCACCACCACCACCCAGTTTTATGGGTTTGACTGTTCCTTAAACCCAACCCAGAACGAGATGGTGTCAGCGTCAGTGCCCAAATTGGGAAAACCACGTTTCCCAACTCAAACCGCAAAAGGGTCACCTAAAAATCAAAACTTTGAAACAAAAACCTCACATGGTAAGAGGTCTCCAGCTCACGCGCAAGATCACATCATGGCTGAAAGAAAGCGAAGAGAGAAACTCAGCCAGAGTTTCATTGCTCTTGCATCTCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGAGCTTAAAGAGCGGTTGGCAGTGCTTGAAGAGCAGAGCAAAAAAACAAGGGCAGAATCAGTGGTGGTTCTGAACAAACCAGACCTCTCTGGTGATGATGATTCTTCTTCATGTGATGAGAGCATTGCTGCTGATAGTGTCAGTGAATCATTGTTTGAAGTGGAATCAAGAGTATCAGGGAAGGAGATGTTGCTTAGGATCCACTGCCAGAAGCAAAAGGGTCTTTTGGTCAAATTACTGGCCGAGATTCAAAGCTGTCACTTATTCGTTGTTAATAGCAGTGTCTTACCCTTCGGTGATTCTATCCTTGACATTACCATAGTGGCTCAGATGGGTGAAAGTTACAATTTGACCACTAAGGAACTTGTCAAGAACCTACGCGTGGCCGCATTGAAGATATTGTCATAA 1155 0.4381 MMEELNKPMDGSAASWLSDLEMDDYNLFPDECPLNLNLFDDQEFLSQDIASALEEQTLTLQESLSSECPSKTVSNSSTDETSFDFERPTKLLKTTTSSSCNADSSTITKTLSPKLSPSSSFSSFQSQILSFDNPNSSSSPPNTTTTTQFYGFDCSLNPTQNEMVSASVPKLGKPRFPTQTAKGSPKNQNFETKTSHGKRSPAHAQDHIMAERKRREKLSQSFIALASLVPGLKKMDKASVLGDAIKYVKELKERLAVLEEQSKKTRAESVVVLNKPDLSGDDDSSSCDESIAADSVSESLFEVESRVSGKEMLLRIHCQKQKGLLVKLLAEIQSCHLFVVNSSVLPFGDSILDITIVAQMGESYNLTTKELVKNLRVAALKILS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01810 384 Coils Coil 241 268 - -
Pumo4g01810 384 SMART finulus 208 257 IPR011598 GO:0046983
Pumo4g01810 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
Pumo4g01810 384 MobiDBLite consensus disorder prediction 169 204 - -
Pumo4g01810 384 MobiDBLite consensus disorder prediction 61 117 - -
Pumo4g01810 384 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983
Pumo4g01810 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Pumo4g01810 384 Gene3D - 191 268 IPR036638 GO:0046983
Pumo4g01810 384 PANTHER BHLH TRANSCRIPTION FACTOR 60 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01810 Pumo-Chr4 24360398 24362766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01810 87 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.532 5.35e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01810 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01810 - - gmx:100788128 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01810 4 24360398 24362766 Pumo4g01810 4 24360398 24362766 ECH