Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01807 ATGGCTGCAGGGATTGGCCTTGTCTCGGTGACCCAGATCCAAAATTTGTCAAAATCCCAACAGCACCATCAAAATCAACCAACAACAAAAAACCCTAACTCCTCCACCTCATCTCCTCCTCCTCCCTCATCAACTTGGATGTGGAATCCAAGGGACCATCAAGCAGATCAAGATGACTCGTGGGAGGTCAGAGCCTTCGCAGAAGACACCAGTAACATCATGGGCACCACCTGGCCCCCTAGGTCCTACACCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCTCGCCTTCACCAAGCAGCAGCCTCACCCATCAACAGCAACAACAACCACATCTCCTCTTTTACTCACACACAGTACCCTTCAGTACCTTCTTCTCTCAACCAGGAGCCTTTTGCAAATGGGGGGTTGTGCCTCTTGTACCCCTTTCCAAGCCCTAACAATGTTGCTTCATTTTCTTCCTCTCTTGGCCACCACCACACTAGTTTTAATAATAATAATAATAATGCATGTGGTGACTCACCTTCCACTGTTTTTTCAGTCTCTTCTTCTTCCCATTATTCCCAGTACCCTCCAATGAGGGTGCCTAGTTGCTCAGCTACTTCCTTTGATTTCTCACTGGCTCAGCCTGCTCCTGGGAGGAATGTTTTCTCTTCTTATTCTGGGAAAGTGGAGCAACAACCCACAGCCTCTTCTTCCACCCATCATGGCCACCACCACGACGAGCTTGATCTAGAGCTCCGCTTGGGAAATAGATCAACATCAACGTGA 816 0.5 MAAGIGLVSVTQIQNLSKSQQHHQNQPTTKNPNSSTSSPPPPSSTWMWNPRDHQADQDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAAASPINSNNNHISSFTHTQYPSVPSSLNQEPFANGGLCLLYPFPSPNNVASFSSSLGHHHTSFNNNNNNACGDSPSTVFSVSSSSHYSQYPPMRVPSCSATSFDFSLAQPAPGRNVFSSYSGKVEQQPTASSSTHHGHHHDELDLELRLGNRSTST 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01807 271 Gene3D Classic Zinc Finger 73 136 - -
Pumo4g01807 271 PANTHER OS07G0101800 PROTEIN 55 267 - -
Pumo4g01807 271 MobiDBLite consensus disorder prediction 16 33 - -
Pumo4g01807 271 MobiDBLite consensus disorder prediction 232 248 - -
Pumo4g01807 271 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Pumo4g01807 271 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Pumo4g01807 271 SMART c2h2final6 83 105 IPR013087 -
Pumo4g01807 271 MobiDBLite consensus disorder prediction 232 271 - -
Pumo4g01807 271 Pfam C2H2-type zinc finger 83 107 - -
Pumo4g01807 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Pumo4g01807 271 MobiDBLite consensus disorder prediction 249 263 - -
Pumo4g01807 271 MobiDBLite consensus disorder prediction 16 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01807 Pumo-Chr4 24290050 24291263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01807 46 164 C2H2 Transcription Factor Family AT4G17810 50.394 8.25e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g01807 zf-C2H2_6 5.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01807 - - gmx:102660795 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01807 4 24290050 24291263 Pumo4g01807 4 24290050 24291263 ECH
Pumo8g02082 8 57753228 57754503 Pumo4g01807 4 24290050 24291263 PCT