Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01806 ATGACTTCATTGCCGCCGGGGTCCAAGAACAAGTCGAAGCCGCCGGTGATAATCACCAGAGAGAGCGCCAACACGCTGAGGGCACATATCCTCGAAGTCGGAAGCGGCTGCGACGTGTTCGACTGCGTCACCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGCGTCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGTCTCCGACAGCCGGCGGCTGCCGGAGCCGTGGTCACGCTGCACGGCAGGTTCGAGATTCTCTCCCTCTCCGGCTCGTTCCTCCCTCCGCCGGCTCCGCCGGGGGCCACCAGCCTCACAATCTTCCTCGCCGGCGGGCAGGGGCAGGTCGTCGGAGGGAGCGTGGTCGGAGAATTAACCGCGGCAGGGCCAGTAATCGTAATCGCAGCGTCGTTCACCAACGTGGCTTACGAGAGGTTACCATTAGAAGAAGAGGAACAACAGCAACAGCTTCAGATTCAGCCACCCGCAACGACGTCGTCTCACGGAAACAACAACAACAACAACAACAGCAATAACAATAACCCTTTCCCTGACCCTTCCTCAGGACTTCCCTTCTTCAATTTACCGCTTAATATGCAGAATGTTCAGTTACCCGTGGAGGGTTGGGCGGGAAACGCTGCTTCACGTCCACCACCTTTTTGA 663 0.5943 MTSLPPGSKNKSKPPVIITRESANTLRAHILEVGSGCDVFDCVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQQQQLQIQPPATTSSHGNNNNNNNSNNNNPFPDPSSGLPFFNLPLNMQNVQLPVEGWAGNAASRPPPF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01806 220 MobiDBLite consensus disorder prediction 151 194 - -
Pumo4g01806 220 MobiDBLite consensus disorder prediction 152 194 - -
Pumo4g01806 220 FunFam AT-hook motif nuclear-localized protein 26 153 - -
Pumo4g01806 220 CDD DUF296 27 110 IPR005175 -
Pumo4g01806 220 Gene3D - 26 166 - -
Pumo4g01806 220 Pfam Plants and Prokaryotes Conserved (PCC) domain 27 140 IPR005175 -
Pumo4g01806 220 PIRSF ESCAROLA 3 219 IPR014476 GO:0003680
Pumo4g01806 220 ProSiteProfiles PPC domain profile profile. 23 160 IPR005175 -
Pumo4g01806 220 SUPERFAMILY AF0104/ALDC/Ptd012-like 23 153 - -
Pumo4g01806 220 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 197 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01806 Pumo-Chr4 24247493 24248829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01806 8 218 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 77.315 3.68e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01806 - - pvu:PHAVU_003G230600g 368.622