Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01804 ATGGACTCTCGCGAGCCGCCCAGGCCACCGCCGCCAACCATCATGGCGGGCCCCACCGCCTACGCCTCCGCCAACATCGGCCCTAATTCCTCCTCCGGCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTCGCCGCCGTGCCGCCGCCGCAACAGCAGCAGCCTCCGCCATCGTCGGAGCCCTTCCCCGCCGCCGCCTACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGCCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCCCCCACCCATGCCTCACCTCCCCCTCCCGCCGCCTCCGGCGGCGGCGATTCGGCCGGCACGACGTCTGCGGAAGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGAAAGAAACAGCTTGATGCGCTCGGTGCTGGTGGGGTTGGATTCACGCCCCACGTGATTCTGGTGGAGTCTGGCGAGGACGTAACAGCAAAAATTATGGCTTTTTCTCAGCAAGGGCCTCGGACGGTTTGTATTCTTTCTGCTATTGGTGCAATCTGTAATGTCACCCTTCGACAGCCTGCATTGTCCGGTCACTCTGGTGGTACTGCTAAATACGAGGGCCGATTTGAGATTATATCTTTATCAGGTGCTTTGCAGCAATCTGAAAATAACGGTGAACGTAGCAGAACATGCACTTTGAGTGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGTGGAGTTGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATTGTGGATGGAAAAAAGAGCTCGAATGCCCTGAAATCTGGGCCTTCTTCTGCACCTCCACCCCAAATGCTAACCTTTGGTGCACCAATGACTCCAACTAGTCCTAACTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAAGATCATAGTCCTTTTTGTAGGGGGCCTGGGCCTGGGCCTGGGCATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1089 0.5859 MDSREPPRPPPPTIMAGPTAYASANIGPNSSSGAMLAPATARFPFAAVPPPQQQQPPPSSEPFPAAAYDGSSSPMKACSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPAASGGGDSAGTTSAEAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDVTAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGHSGGTAKYEGRFEIISLSGALQQSENNGERSRTCTLSVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKSSNALKSGPSSAPPPQMLTFGAPMTPTSPNSQGPSTESSEEQDHSPFCRGPGPGPGHGLYNNASQPVHNMPMYHHPLWAGQTHQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01804 362 MobiDBLite consensus disorder prediction 279 345 - -
Pumo4g01804 362 MobiDBLite consensus disorder prediction 1 143 - -
Pumo4g01804 362 Gene3D - 156 284 - -
Pumo4g01804 362 MobiDBLite consensus disorder prediction 299 319 - -
Pumo4g01804 362 MobiDBLite consensus disorder prediction 49 63 - -
Pumo4g01804 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 272 IPR005175 -
Pumo4g01804 362 MobiDBLite consensus disorder prediction 1 16 - -
Pumo4g01804 362 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Pumo4g01804 362 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Pumo4g01804 362 CDD DUF296 155 272 IPR005175 -
Pumo4g01804 362 ProSiteProfiles PPC domain profile profile. 150 293 IPR005175 -
Pumo4g01804 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 52 323 IPR039605 GO:0003680
Pumo4g01804 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01804 Pumo-Chr4 24228835 24234790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01804 81 362 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.592 2.60e-76 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01804 - - gmx:100789717 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02085 8 57804069 57808192 Pumo4g01804 4 24228835 24234790 PCT