Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01800 ATGCCAGTTCCACTTGCCCCCTACCCAACACCACCAGCTCCTTATACATCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAATTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGAGCGACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 438 0.4909 MPVPLAPYPTPPAPYTSPANGAQSQLVCSGCRNLLVFPIGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTTEQKFST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01800 145 PANTHER PROTEIN LSD1 17 55 IPR040319 -
Pumo4g01800 145 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Pumo4g01800 145 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Pumo4g01800 145 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Pumo4g01800 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Pumo4g01800 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Pumo4g01800 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Pumo4g01800 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01800 Pumo-Chr4 24187600 24191976 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pumo4g01800 zf-LSD1 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01800 - - gmx:100799843 275.789