Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01794 ATGGGAGGGGCATCACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAAGAACTAGTGGGATACTACCTTAAGAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTTTACAAATTTGATCCGTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAACCGGGATTTGGAATGGTTTTTCTTTTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCACTGTTACTGGGTACCGCAAGACCTTGGTTTTCTATCTTGGGAGAGCCCCTTTAGGGGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAAGCCACACCATCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAGGCAAGTACTTCACAGATAGAACACAAGGGCAAAAGGGCTGCAGGCAGTTCCATCAATAAGAGTGACACCTCAATGAGACTCTCTAGTGAGCCATTCAGCAACTCTGGTGATGCTTCATCTCAAGCAAGTCACCTGAATAATGAGAGTCGTTATTCCAGCCCTATTACTTCTCCATACAATGTGGCTCCAATGGGAGAGTTTAACCAAGCTTCTGTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACCCTCAATTAAAAGATGCCGTGGCTGAATATTTTCCACGGTATGACTTACCAAGTGTGATGACACCATGGCAATCATTGGAACATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGGGGAAGTTGAATTTGCTGATAGTCTCAGTCAAATTGGCTGCATGTCACCTTACTCTAGACAATGGAATTCCATGGACTTTTATGGAAATGGGAATGGAAATGGGGATGTCCCTTATGATGGTTATGATCAAATTAATCCAATCTCATATCCTGAACCCTTTTAA 1053 0.4368 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPNRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVTGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDDLGQATPSFQGGFALCRVIKKNEKASTSQIEHKGKRAAGSSINKSDTSMRLSSEPFSNSGDASSQASHLNNESRYSSPITSPYNVAPMGEFNQASVETNPSNFWISPDMILDSSKDYPQLKDAVAEYFPRYDLPSVMTPWQSLEHPETSSSLSYSNFNGEVEFADSLSQIGCMSPYSRQWNSMDFYGNGNGNGDVPYDGYDQINPISYPEPF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01794 350 MobiDBLite consensus disorder prediction 178 214 - -
Pumo4g01794 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 208 - -
Pumo4g01794 350 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Pumo4g01794 350 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Pumo4g01794 350 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Pumo4g01794 350 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Pumo4g01794 350 FunFam Nac domain-containing protein 86 15 162 - -
Pumo4g01794 350 MobiDBLite consensus disorder prediction 164 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01794 Pumo-Chr4 24088347 24091175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01794 1 300 NAC Transcription Factor Family AT4G17980 56.623 3.56e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g01794 NAM 7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01794 - - gmx:100792714 661.759