Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01782 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAACATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCGATCTCAAGTGGACTCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCGAGCAATGGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAATACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGCATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCTATAGTGTCCATGTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAGTATCCATTGATATAGAGAAAGTATCCAGGTTTGTTGATAATGATCATGAGCTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGACAAGGGACGAGATTGTTGGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTTGAAAGTACTCCTCAACAAACGAAATCTGAAATTACTTTGGCTAGGGAGGAAGTGGATATAGTTGATGCTTCCAAGGGTGAGAGTGTTGCTTCTCCACATACACTAAAAAGAAAAGTTCTAAGCAACACTGACAGAAATACAAAAGCTCCAAATAAAGTAGGTGTTCATAGGGATTCATGTGAGATAAGAGCAAACCGGAAAAAGATAAAAGTAGACTGGACACCTGAGCTGCACAAAAAGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATGAAGCCATTCCTTCTCGAATATTGGAATTAATGAAAGTGGAGGACTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAAGAACGAAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATTATGGCATTTCCTCCATATCATTCTAATCACACGCTTCCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCCAACAGCAGGCATGCAGATTTGGGGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGGTGAAAATTGGCACTGGAAACCATTTCCAGGGATGCATGCTGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTGGTTTTCCCTACTCTCAGAATATGCCTGCATTGCTCAATGCTGATGCAGCGGATCACACGTTTACCATGCCACAAAGTTCCTTCGAGCATTATCCGGCAGAGGAGGTAGTTGACAAGGTTGTGAAAGAGGCAATAAGCAAACCATGGCTACCCTTGCCCTTGGGTCTGAAACCCCCTTCCACAGAGAGTGTGTTGGCTGAGCTATCAAGGCAAGGCATTTCCAGCATCCCTCCTCCTAAGGGTTCAAATTGA 1716 0.4376 MVFTANDLQEWKDFPKGLKVLLLEGDNISAAEIRAKLEAMDYNVSTFCDENEALSAISSGLESFHIAIVEVSSSNGQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASILSESLKPVKESIVSMLQLQTDNEQHESRVSIDIEKVSRFVDNDHELSPGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAESTPQQRKSEITLVREEVESTPQQTKSEITLAREEVDIVDASKGESVASPHTLKRKVLSNTDRNTKAPNKVGVHRDSCEIRANRKKIKVDWTPELHKKFVKAVEQLGIDEAIPSRILELMKVEDLTRHNVASHLQKYRMHKRQILPKEEERKWLNQRERSYCVQRPIMAFPPYHSNHTLPLAPVYPMWGQSGSPTAGMQIWGSPGYPLWQPTGENWHWKPFPGMHADAWGCPVLPVPPPQAPGFPYSQNMPALLNADAADHTFTMPQSSFEHYPAEEVVDKVVKEAISKPWLPLPLGLKPPSTESVLAELSRQGISSIPPPKGSN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01782 571 MobiDBLite consensus disorder prediction 237 255 - -
Pumo4g01782 571 MobiDBLite consensus disorder prediction 195 222 - -
Pumo4g01782 571 FunFam Two-component response regulator 328 391 - -
Pumo4g01782 571 Pfam Myb-like DNA-binding domain 335 384 IPR001005 -
Pumo4g01782 571 SUPERFAMILY Homeodomain-like 331 389 IPR009057 -
Pumo4g01782 571 FunFam Two-component response regulator-like APRR2 17 143 - -
Pumo4g01782 571 Gene3D - 328 390 - -
Pumo4g01782 571 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 329 388 IPR017930 -
Pumo4g01782 571 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Pumo4g01782 571 SMART REC_2 18 128 IPR001789 GO:0000160
Pumo4g01782 571 SUPERFAMILY CheY-like 16 134 IPR011006 -
Pumo4g01782 571 NCBIfam myb-like DNA-binding domain, SHAQKYF class 332 387 IPR006447 GO:0003677
Pumo4g01782 571 Gene3D - 18 139 - -
Pumo4g01782 571 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Pumo4g01782 571 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 566 IPR044825 GO:0003700|GO:0045893
Pumo4g01782 571 MobiDBLite consensus disorder prediction 184 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01782 Pumo-Chr4 23443033 23450065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01782 1 565 Response Regulator Gene Family AT4G18020 50.340 1.72e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo4g01782 Response_reg 1.4e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01782 - - gmx:100820385 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02101 8 57996325 58002706 Pumo4g01782 4 23443033 23450065 PCT