Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01771 ATGGCTCTCTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATTTGTTCAGTCTCGTGCAGCACATTACCCAAATTCTCAAGAAAATGGCACAGACGTTGGTGCATGTGAATTTGGGTCCTTTGGTGCCACTGTTAATGGTGGGGACGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTACCAATAGTGCATTCTGCTCAGGCAACGGTGTGACTGTGGTTATAACTGACCAAGGCTCAGGTCATAACACTGACTTCATTCTTAGCCAACGAGCCTTTGGTAGGATGGCTCTGAACACTGACGCAGCTGCTTCTCTATTAGCTCTTGGCGTAGTTGATATTCAATATAGACGTGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCATATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTGCAGCTTTGTGAGACTCAGAACTTTGTGTGCAAGTTATTGGACCGGAGTCATGGGGCAGTTTGGACCACTACTGCTCCACCCAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTCCTGAACAAGAGGGAGAAGAAACATGGGTGGTTCCTGTCAATAACATACCACAAGACTGGAAGGCTGGACAAACGTACGACTTAGGGGTACAAGTGGACCAATAG 753 0.4515 MALSLLCPLLATFLFMQTLADTSFVQSRAAHYPNSQENGTDVGACEFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAFCSGNGVTVVITDQGSGHNTDFILSQRAFGRMALNTDAAASLLALGVVDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVIWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLSLRMLFSPEQEGEETWVVPVNNIPQDWKAGQTYDLGVQVDQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01771 250 CDD DPBB_EXLB_N 25 141 - -
Pumo4g01771 250 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Pumo4g01771 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Pumo4g01771 250 PANTHER EXPANSIN-B3 14 247 - -
Pumo4g01771 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Pumo4g01771 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Pumo4g01771 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pumo4g01771 250 Gene3D - 11 142 IPR036908 -
Pumo4g01771 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Pumo4g01771 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Pumo4g01771 250 Pfam Expansin C-terminal domain 148 227 IPR007117 -
Pumo4g01771 250 Pfam Lytic transglycolase 62 136 IPR009009 -
Pumo4g01771 250 Gene3D - 143 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01771 Pumo-Chr4 23335981 23337825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01771 2 243 Expansin Gene Family AT4G17030 42.387 4.28e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01771 - - gmx:100812555 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02110 8 58077481 58079596 Pumo4g01771 4 23335981 23337825 PCT