Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01763 ATGGCCACGCGCAAGAACGCGGAGCTAGAAGCACGCGCGGCCAAGCTCAGCTTGGAGGCCCAGGTGTGGCAGGCCAAGGCCCGGGCCCAAGAGGCCACCGCGGCCTCCCTACAGGCCCAACTGCAGCAGACCATAATGTGTCACGGCGCCGATGACCCCGCCGCCGCCGCCGGCGTGTCATGCGCCGTGGAAGTCCAGGCGGAGGACGCGGAGTCCGCCTACATCGACCCCGACCGCGTCGTCGTGGCGGCGGCGCGTCCCAAATGCAGAGGGTGTGCAAAGCGCGTGGCCTCGGTGGTTGTTTTGCCGTGTCGGCACTTGTGCATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACCCCAAAGAATTCAACCGTTGAAGTTTTTCTCTCATAA 411 0.6399 MATRKNAELEARAAKLSLEAQVWQAKARAQEATAASLQAQLQQTIMCHGADDPAAAAGVSCAVEVQAEDAESAYIDPDRVVVAAARPKCRGCAKRVASVVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01763 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 136 IPR013083 -
Pumo4g01763 136 ProSiteProfiles Zinc finger RING-type profile. 89 123 IPR001841 -
Pumo4g01763 136 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 2 133 IPR017066 -
Pumo4g01763 136 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 69 135 - -
Pumo4g01763 136 Coils Coil 6 26 - -
Pumo4g01763 136 Pfam Zinc finger, C3HC4 type (RING finger) 88 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01763 Pumo-Chr4 23179176 23179586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01763 89 125 Miscellaneous Gene Families AT4G39050 37.838 2.89e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01763 4 23179176 23179586 Pumo4g01763 4 23179176 23179586 ECH
Pumo8g02125 8 58262989 58265626 Pumo4g01763 4 23179176 23179586 PCT