Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01739 ATGTATGATCGGGTATGGATGTATGACACAAATTTCAATGAGAGTGGTTGGTATGACCCAAATTACAATCACGTTGATATTGATCTTGGCACCAACAATGATGCTTACAAATTGCCAGCCGAAGTGTTAAGAAGTGCAGCCCAATCGTGGAATGTTTCGTATTCCTTACAATTTGACTATGACGATGAGTTTGATAAGCCCCTCGACCGGCCTTATCAGTATTATGTATGCTTCCACTTTGCAGAAATTGAGCAACTTCCAGATGGGGAAAAAAGAATAATCAGTATCACCCTTAACTCCAAAACCTCACAACCTTTGGTTCTTGAATACTTGAAGCCCGTTAGCCTTGAATACGTAACTCCAGGTTATGTGCGGTTTACAATTAGTGCAACACCACAATCGGACGCTCCTCCTATCCTCAACGCCTTCGAGATCTATAAGGTCATAACACAACTTGATTCACCAACAGACGCTCGAGATGTTGGTGCTATTCAGGATATCAAAAGCGCGTATCAGGTCACTAGATTCAATTGGCAAGGAGACCCATGTCTTCCAAAGCAATATGCGTGGGAGGGTCTTGTTTGCAGCTCTGACACCAATCCAAGGATAACATCTTTGAACCTGAGCTCAAGCAAACTGACAGGGGAGATAACTACTTCATTCTCATATCTTACAGAACTAGAATTCCTGGATTTGTCACACAACGAGTTGGAAGGACCTCTGCCGGAATTTCTGGCAGAATTTCCAAAGTTAAAAGTTCTTAATCTGACAGGGAACAAGCTTTCGGGTCCAATTCCTAAGGCTCTCAAGGAAAAAGCAGATAAAGTTTTGCAATTAAGTGTGGCTGACAATCCTGATCTTTGTATGACGGATTCATGCAAAAAGAAGAACTTTGTTGTACCACTCGTTGCATCACTTTCAGCCTTTACTGTAATCCTCTTGATTTCTCTTGGATTTTGGATATTAAGAAGACAAAAAGTTGTACATTCTGATTCTCGTTCACTAAAATCAAAACATCGAGCATTCAGTTACGCTGAGATTCTCGACATTACTGATAATTTCAACAATACTATTGGAGAAGGAGGATTTGGAAAAGTTCACTTTGGCATTCTACAAGATCACACTCAAGTTGCGGTTAAGGTGCTTTCACCATCATCGATGCAAGGTTATAAGGAATTTCAATCAGAGGTACAACATTTGATGACTGTTCATCATAGAAATTTGGTCTCTCTCATTGGGTACTGCGATGAAGGTGAAATTAAAGCGTTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTATTTGTGGAAAATACAAATGTCTTAAACTGGAGTGAGAGACTTGATATCGCAGTTGATGCAGCACAGGGACTAGATTATTTGCATAATGGCTGTAAACAACCTCTTATCCATAGAGATTTGAAGACTTCAAACATATTACTAGATCAGAACATGCATGCCAAGATAGCCGATTTTGGTCTTTGTAGAGCTTTTGGAAATGATATTGATTCTCATATATCAACTCGTCCAGCTGGTACACCAGGTTATGTTGATCCAGAATTCCAGAGAATTGGAACATCAAATAAGAAAAGTGATATCTACAGCTTTGGGATAATTCTATTCGAGTTAATCACTGGCCAAAAAGCACTAGCAAGAGCAGCTGGAAAAAACATTCACATACTTCAATGGGTTATTCCCATGGTTGAAAGAGGAGATATTCAAAACATTGTTGATCCGAGGTTGCAGGGAGAATTCAGAAGCAGTTCTGCATGGAAAGTTGTAGAGATTGCCATGTCATGTACTTCACCAACTGCAGCAGATAGGCCAGACATGAGCCAAATATTGGTTGAGCTAAAGGAATGTCTATCATTGGAGATGGTTCAGATAAACAGCGAAAGAGCAATTACTGTAGCTGGATTGACTTCTTTGCAGATTGGATCAGAAATTGCTCCCTTAGTTAGGTAG 1974 0.3992 MYDRVWMYDTNFNESGWYDPNYNHVDIDLGTNNDAYKLPAEVLRSAAQSWNVSYSLQFDYDDEFDKPLDRPYQYYVCFHFAEIEQLPDGEKRIISITLNSKTSQPLVLEYLKPVSLEYVTPGYVRFTISATPQSDAPPILNAFEIYKVITQLDSPTDARDVGAIQDIKSAYQVTRFNWQGDPCLPKQYAWEGLVCSSDTNPRITSLNLSSSKLTGEITTSFSYLTELEFLDLSHNELEGPLPEFLAEFPKLKVLNLTGNKLSGPIPKALKEKADKVLQLSVADNPDLCMTDSCKKKNFVVPLVASLSAFTVILLISLGFWILRRQKVVHSDSRSLKSKHRAFSYAEILDITDNFNNTIGEGGFGKVHFGILQDHTQVAVKVLSPSSMQGYKEFQSEVQHLMTVHHRNLVSLIGYCDEGEIKALIYEYMANGNLQQHLFVENTNVLNWSERLDIAVDAAQGLDYLHNGCKQPLIHRDLKTSNILLDQNMHAKIADFGLCRAFGNDIDSHISTRPAGTPGYVDPEFQRIGTSNKKSDIYSFGIILFELITGQKALARAAGKNIHILQWVIPMVERGDIQNIVDPRLQGEFRSSSAWKVVEIAMSCTSPTAADRPDMSQILVELKECLSLEMVQINSERAITVAGLTSLQIGSEIAPLVR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01739 657 SMART serkin_6 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01739 657 FunFam Leucine-rich repeat receptor-like kinase 159 290 - -
Pumo4g01739 657 Gene3D Phosphorylase Kinase; domain 1 334 427 - -
Pumo4g01739 657 Gene3D Transferase(Phosphotransferase) domain 1 428 641 - -
Pumo4g01739 657 Pfam Leucine rich repeat 201 261 IPR001611 GO:0005515
Pumo4g01739 657 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Pumo4g01739 657 Pfam Malectin-like domain 2 148 IPR024788 -
Pumo4g01739 657 CDD STKc_IRAK 358 623 - -
Pumo4g01739 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Pumo4g01739 657 SUPERFAMILY Protein kinase-like (PK-like) 335 621 IPR011009 -
Pumo4g01739 657 Pfam Protein tyrosine and serine/threonine kinase 354 620 IPR001245 GO:0004672|GO:0006468
Pumo4g01739 657 Gene3D - 1 149 - -
Pumo4g01739 657 FunFam Leucine-rich repeat receptor-like protein kinase 330 427 - -
Pumo4g01739 657 SUPERFAMILY L domain-like 171 271 - -
Pumo4g01739 657 PANTHER OS07G0107800 PROTEIN-RELATED 2 625 - -
Pumo4g01739 657 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 428 634 - -
Pumo4g01739 657 ProSiteProfiles Protein kinase domain profile. 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01739 657 Gene3D Ribonuclease Inhibitor 163 286 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01739 Pumo-Chr4 22862741 22867939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01739 1 657 Receptor kinase-like Gene Family AT1G51830 41.691 2.00e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pumo4g01739 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01739 - - mtr:25500358 874.774