Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01731 ATGGAGCTTAGTTTTAAGCACCAACTTGGTCTTGTTTGTGTCATACTGCTCTTTCCTGCATTGTGTTACTGCCAGGAATATACTAAATCCAGAGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGCGAATATGGAAGGAAGATGGATGGATATGATGGAAGAGTCGCAGGGGTGTCTGGGCTATGGAGGAATGGAGCTGGCTGTGGTACATGTTATCAGGTAAGGTGCCTAGTACCAGATTTATGTGACAAGAATGGAGCATACCTGGTGGCAACAGACCAGGGTTATGGAGACAGAACAGACTTCGTGATGAGCCCACGCGCCTTCTTAAAATTGGGACGCGATGAATATTCATCTGAAGAGCTTAAGAAATACGGCACAGTGGACATTGAATACAAAAGGGTTCCCTGTACATACACCGGCAATGTCTTGTTTCACATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCTTTGGTAATTCTCAATGTAAATGGAATACACGACATTACTGCTGTTGAGATGTATCAGGCGGAGTCCCGACAATGGAAGTCACTTAACAGGAACTATGGAGCAGTGTTTGACTTTCCTAACCCACCAAGTGGCGAAATCCGGTTGAGGTTTAAGGTGAGTGGCATGTCTGGTTGGGTGGATCCCAAGATTGTCATTCCTAGTAACTGGAAGCCTGGGAATACTTATGTCACCGAGGTTCAGCTTAATTAA 750 0.4547 MELSFKHQLGLVCVILLFPALCYCQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMDGYDGRVAGVSGLWRNGAGCGTCYQVRCLVPDLCDKNGAYLVATDQGYGDRTDFVMSPRAFLKLGRDEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSSNPGYFALVILNVNGIHDITAVEMYQAESRQWKSLNRNYGAVFDFPNPPSGEIRLRFKVSGMSGWVDPKIVIPSNWKPGNTYVTEVQLN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01731 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Pumo4g01731 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 244 IPR007117 -
Pumo4g01731 249 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Pumo4g01731 249 PANTHER EXPANSIN-B3 17 247 - -
Pumo4g01731 249 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pumo4g01731 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Pumo4g01731 249 Pfam Lytic transglycolase 64 141 IPR009009 -
Pumo4g01731 249 Pfam Expansin C-terminal domain 153 233 IPR007117 -
Pumo4g01731 249 Gene3D - 148 248 IPR036749 -
Pumo4g01731 249 Gene3D - 19 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01731 Pumo-Chr4 22769926 22771704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01731 1 248 Expansin Gene Family AT4G17030 44.048 4.14e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01731 - - gmx:100777265 482.256