Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01730 ATGGAACTCGGTTTTAGGCACCGGCTTGGGCTTGTTTGTGTGATATTGCTCTTCCCTGCACTGTGTAACTGCCAGGAATATTTCACGAAATCCAGAGCAACCTATTATGGTACCCCTGATGGCTACGGGACTCCAACGGGAGCTTGTGGCTTTGGCGAATATGGAAGGAAGATGGATGGGTATGATGGAAGAGTCGCAGCGGTGTCTGGGCTATGGAGGAATGGAGCTGGCTGTGGTGCATGCTATCAGGTAATGTGCAAAATACCAAAATTATGCAATGTGAATGGAGTAACCCTGGTGGCAACAGACTATGGTCAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTTCTCAAGATTGGGAGTCAATAAAATTGCATCTGAAGAGCTTAAGAAAAAAGGCACAGTGGATATTGAATACAAAAGGGTCCCATGTAAATACACAGGAAATGTCTTGTTTCATATCCAGGAAACTAGCACCAACCCTGGTTACTTCGCTGTTGTCATTCTCAATGTAAATGGAAAATACGACGTCACTGCTGTTGAAATGTGGCAGAAAACGCAACAACGATGGGAACCACTGCGCAGGTCCTATGGGGCAGTGTTTGACTTTACTAACCCACCCAGTGGTGAAATCCTCTTGAGGTTTAAAGCGGGCTTTTGGAAGCTGGCGAAAATCCCTGCTAATTGGAAGCCTGGAGCTACTTATGACACCAAACTTCAGCTTTATTAG 738 0.4634 MELGFRHRLGLVCVILLFPALCNCQEYFTKSRATYYGTPDGYGTPTGACGFGEYGRKMDGYDGRVAAVSGLWRNGAGCGACYQVMCKIPKLCNVNGVTLVATDYGQGDRTDFIMSPRAFSRLGVNKIASEELKKKGTVDIEYKRVPCKYTGNVLFHIQETSTNPGYFAVVILNVNGKYDVTAVEMWQKTQQRWEPLRRSYGAVFDFTNPPSGEILLRFKAGFWKLAKIPANWKPGATYDTKLQLY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01730 245 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pumo4g01730 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Pumo4g01730 245 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Pumo4g01730 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Pumo4g01730 245 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Pumo4g01730 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 240 IPR007117 -
Pumo4g01730 245 PANTHER EXPANSIN-B3 18 243 - -
Pumo4g01730 245 Pfam Lytic transglycolase 69 142 IPR009009 -
Pumo4g01730 245 Pfam Expansin C-terminal domain 154 220 IPR007117 -
Pumo4g01730 245 CDD DPBB_EXLB_N 29 147 - -
Pumo4g01730 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Pumo4g01730 245 Gene3D - 20 147 IPR036908 -
Pumo4g01730 245 Gene3D - 148 241 IPR036749 -
Pumo4g01730 245 SUPERFAMILY Barwin-like endoglucanases 15 152 IPR036908 -
Pumo4g01730 245 SUPERFAMILY PHL pollen allergen 152 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01730 Pumo-Chr4 22766349 22767625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01730 9 244 Expansin Gene Family AT4G17030 48.163 2.50e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01730 - - gmx:100813628 461.455