Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01729 ATGGAACTAAGTTTTAAGCACCAACTTGGGCTTGTTTGTGTGATATTGCTCTTCCCTGCACTGTGTAGCTGCAAAGAATATGTTACGAACTCCAGAGCAAGCTATTATAATACCCCTGATGGCCTTGGGAATCCAAGGGGAGCTTGTGGCTTTGAAGAATATGGAAGAACGATTAATAATGGCAGTGTAGCAGCCGTATCTGGGCTATGGAGGAATGGAGCTGGCTGTGGTACATGTTATTGGGTATGGTGCAAAATGCCACAATACTGCGGGAAAGGAGTGCAGGTGGTGGCCACAGACTATGGTTCAGGAGACAGAACAGACTTCATAATGAGCAAACGTGGATTCTCAGGATTGGCACGCAACGACGCTGCTTCTAAAGAGTTGTTCAAACGCGGGGTGGTGGATATTGCATTCACAAGGGTTCCCTGTAAATACCTTGGTAACATTAAGCTCCAAGAGGGCAGAAACGATGGGAGCCACTACGCAGGGTGTAATGGGGCAGTGTTTGACTATGCTAACCCACCCAATGGTGAAATTCTCTTGAGGTTTCAAGTTGGCTATGGATATTGGCTGCATTCAAATATCCCTATCCCTGCTAATTGGAAGCCTGGAGCTACTTATGACACCAAAGTGCAGATTTATTAG 648 0.4614 MELSFKHQLGLVCVILLFPALCSCKEYVTNSRASYYNTPDGLGNPRGACGFEEYGRTINNGSVAAVSGLWRNGAGCGTCYWVWCKMPQYCGKGVQVVATDYGSGDRTDFIMSKRGFSGLARNDAASKELFKRGVVDIAFTRVPCKYLGNIKLQEGRNDGSHYAGCNGAVFDYANPPNGEILLRFQVGYGYWLHSNIPIPANWKPGATYDTKVQIY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01729 215 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Pumo4g01729 215 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Pumo4g01729 215 Gene3D - 146 215 IPR036749 -
Pumo4g01729 215 PANTHER EXPANSIN-B3 167 213 - -
Pumo4g01729 215 Gene3D - 20 145 IPR036908 -
Pumo4g01729 215 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Pumo4g01729 215 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Pumo4g01729 215 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01729 Pumo-Chr4 22760907 22762412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01729 1 214 Expansin Gene Family AT4G17030 42.292 1.47e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01729 - - gmx:100776296 372.474