Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01728 ATGGCAGTGTGGCAGCTGTATCTGGGCTATGGAGGAAGGGAGCTGGCTGTGGTACATGCTATCAGGTATGGTGCAAAATGCCACAATACTGCATGCAACGAGAAAGGAGTGGAGGTGGTGGCCACAGACTATGGTGAGGGTGACAGAACAGACTTCATAATGAGCAAACGTGGATTCTCAGGATTGGCACGCAATGAAGCTGCTTCTAAAGAGTTGTTCAAACACGGGGTGGTGGATATTGCATTCAAAAGGAAAGAGCATCAACGATGGGAGCCCCTGGGCAGGGCTTATGGGGCAGTGTTTGAGTTTGCTAGCCCACGTTGGCTGCTGCCTAGGAAAGCTATTATCCATGCAAATTGGAAGCCTGGAGATAATACTTATGACCTCTGTTAG 393 0.4936 MAVWQLYLGYGGRELAVVHAIRYGAKCHNTACNEKGVEVVATDYGEGDRTDFIMSKRGFSGLARNEAASKELFKHGVVDIAFKRKEHQRWEPLGRAYGAVFEFASPRWLLPRKAIIHANWKPGDNTYDLC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01728 130 SUPERFAMILY Barwin-like endoglucanases 23 84 IPR036908 -
Pumo4g01728 130 Gene3D - 19 84 IPR036908 -
Pumo4g01728 130 PANTHER EXPANSIN-B3 23 84 - -
Pumo4g01728 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 84 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01728 Pumo-Chr4 22749528 22750482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01728 32 84 Expansin Gene Family AT4G17030 47.170 2.28e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01728 - - gmx:100776830 104.76