Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01726 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTGCATGCTCGGGCAGAAAATGTTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAACGAAAGCAAAACTATGATAATGCTGCATCTGGAGGGTTTGTTCCTGATTATAATCAAGGATACCGAAAGCTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCTATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACAAGAGATCTGTGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTCGAAAGTGATATACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGATTCTGAGGCTAGCTCTCTCTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTTTCTAGTACCATTCCTATGTATAGTGATCGCAGTGGCATGAACTTCTCATCTCATGGATTTGAAAAGACCAAAACCTCAGCTGGCCTAATCATGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACTACAAGTTCCTGGAAATCGTGATTCACCGCTGTGCTCAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTATGAGAAACTTGACGAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAAAAACATGTTCAATAGCTTCCAATTCAAGGAGAGCTTAACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGGCAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATCTGTCAAAGTCAAAATGGGTTGAACACTATAGTTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAATCTATTGGTCCGGAATCTACTGCTATGGAATCAAGTAATGTTACAAATGCCAAAAGAAAGCGTGAGCATGACAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCATAAAGCCTAGCTGTGAGGTCAAAGAAGTTGTAGAAGAAGGCTCTAGCTTCAGTCCAAAAAGCCTATTTGCTTTACCCCATGGTGTTGGTGGCTTGCACATGCTGGATTCTTTTAACTTTGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGAGGTGCCTTCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCAAGTTTAAGCTACGGTGCTCAGGTCAGCACCACTAGTAGCTCAGTACACTCACCTGTTACTCATCCTTAA 1629 0.4174 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGYRKLVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDIPMVSVEIGHGSILIRHPSSIARDEDSEASSLSVDNKQCLMNEAYSFSSTIPMYSDRSGMNFSSHGFEKTKTSAGLIMQQEKLERDKSQLEKLQVPGNRDSPLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTAKFPDSLKNMFNSFQFKESLTYFQQLLGEGVFDISLLGAKPEEWKTLKRLVLSNLSKSKWVEHYSFLKKCENKAGKSIGPESTAMESSNVTNAKRKREHDSQNQNFPELKTTMRSPKRVIIKPSCEVKEVVEEGSSFSPKSLFALPHGVGGLHMLDSFNFVGESSEDLLLEVPSNSSFPQAELLHPSLSYGAQVSTTSSSVHSPVTHP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01726 542 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Pumo4g01726 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 524 IPR044589 -
Pumo4g01726 542 MobiDBLite consensus disorder prediction 107 132 - -
Pumo4g01726 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 406 IPR044867 -
Pumo4g01726 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Pumo4g01726 542 MobiDBLite consensus disorder prediction 110 132 - -
Pumo4g01726 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Pumo4g01726 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Pumo4g01726 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Pumo4g01726 542 Gene3D - 283 390 IPR038108 -
Pumo4g01726 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Pumo4g01726 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Pumo4g01726 542 MobiDBLite consensus disorder prediction 411 438 - -
Pumo4g01726 542 Pfam Asx homology domain 287 375 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01726 Pumo-Chr4 22734245 22740248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01726 1 519 C2C2-Gata Transcription Factor Family AT4G17570 51.782 5.89e-155 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g01726 ASXH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01726 - - gmx:100799745 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02143 8 58439760 58444964 Pumo4g01726 4 22734245 22740248 PCT