Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01716 ATGGTCTCCACCCTGACATGCTGCAATAATAAAGCAAACTATGTAGGCCCAAGTGATCCTAACACCGACTCGTACAGTTCTGATAATTCAAGGGTCAGGTCTACAAGACCAACAACAAGAAGGAACACACTATCACGCTCTCCAAGAGCATTGGAGACTGATATGGCCGAATCAAGTGTGGATTTGATTGCAAGAGGTGAACAGGATGGTGGACAAGGTGGAAAAACAATATCATACTCTCAAAGAGCAATGGAGACTGAAATGGTGGAGTCGGCTGTGGATTTGAATGCAAGATATGGACAGAATTGTGGACAAGGTGAAAACACAACATTAGGCACTCCAAGAGCAATGGAGACTAAAATGATAGACTCAAGCGAGGATTTGACTATTGGAAACACCACATTAAGAACTCAAAGAGCAATGGAGACTGGAATGGTAGACTCAAGTGGGGACTTGATTGCTGAAAACACAACATCATGCACCACTCCAAGAGCAATGGAGATGGAATTGGTGGAAACAGTTGTAGGTTTAATTGCAGAACACAGACAGGGTCATGGACAAGGCGACAAGACAACATTGAGTGTTTCAAAGGCAATGGAGACAGAAATGGTGGGCTTGAGTGCTGATTTGATGGCAAGACATAAACCAGTCTTTGGAAAAGGTGAAAACAGAACATCACACGCTCCAAGAGCAGTGAAGAATAAAAAGGCAGAGACAAGTGTGGAGTCAATTGCTAAACGTAGACGGGTTCGTGGACGAGGTGTAAACAAAGCATTATACACACCAACAGCAATGGAGACTGAAATGATGCAATCAAGTGTAAATTTGACTGCAAGACGTGGACAGGGTTGTGGACAAGGTAATACATCATTATGTTCTGCAAGAGTAGTGGAGACTGAACTCATGGAATCAGGGGGGGCTTTGACTGTTGGAAACACAACATTGTACACTCCAAGAGCAATGGAGGTTGAAATGGTACGGGGTCATGGACGACGTGGAAGGGGTCATAGGCAGGGTGGGTATGGTGGTAAACGGGGTACAAGAAGGGTCATGCAGGGTACATGGAGCCACCCTATTCAGAAGAGGGTGAGAAAAGGAGAACAAAACAAGGAAATTAGTAATCCTGGACCAAGCTCAGTAATGGAAAAAGTTCCATCATCACCTGAAGGACAAGCAGCAAACATGAAAAAAGGTTCTTGTTCGGCCGAAGGAGAAAGTTCATGTAAAAAAACCATTTTGTCATGGTTGATAGACTGTAACATTGTTAAGAAAGATGAACAAGTATGCTATAAGGATGGCACAATGGAAAGGATAACAGGAAGAATTACCAGGGGTGGAATTCTCTGCAGCTGTTGCCAGCAGGAAACATCAGTGTGGACTTTTGAGAAGCATGCTGGAAGTGATCTTAGACAACCCTATGAACATATTTACGTCAGAAAAAACAAATCCCTCCGGCAATGCCAGAAGGATGCTTGGCGATGTACCAGGGGACAAACATGCCGGCGTATGTTTTCATATGTCCCGAAAAAAACTGCTGCAGACCAAAATGATGATGCCTGTTCAGTCTGTGGCGACGGAGGAGACTTAATCTGCTGTGACAAGTGTCCCTCCACATATCATCTATCTTGCATGAATATAGAGGTCATTGGGAGTGCTTTGAAGAAGTTGAAAAAGAATTCTCAAAAGAACCTGTGGACCTTAACCCTTCAAGATCATATTGTGGGCCAGGTTGCCGAGAGATATACAAGAAATTGGATGTCTCACTCGGAATCAGAAATGATTATTCGGCAAAATACTCTTGGAAAGTTATCCGCCGAACGGATAAGACAACCAAGAAGGATTTTGCAGATACGAATCTAA 1860 0.436 MVSTLTCCNNKANYVGPSDPNTDSYSSDNSRVRSTRPTTRRNTLSRSPRALETDMAESSVDLIARGEQDGGQGGKTISYSQRAMETEMVESAVDLNARYGQNCGQGENTTLGTPRAMETKMIDSSEDLTIGNTTLRTQRAMETGMVDSSGDLIAENTTSCTTPRAMEMELVETVVGLIAEHRQGHGQGDKTTLSVSKAMETEMVGLSADLMARHKPVFGKGENRTSHAPRAVKNKKAETSVESIAKRRRVRGRGVNKALYTPTAMETEMMQSSVNLTARRGQGCGQGNTSLCSARVVETELMESGGALTVGNTTLYTPRAMEVEMVRGHGRRGRGHRQGGYGGKRGTRRVMQGTWSHPIQKRVRKGEQNKEISNPGPSSVMEKVPSSPEGQAANMKKGSCSAEGESSCKKTILSWLIDCNIVKKDEQVCYKDGTMERITGRITRGGILCSCCQQETSVWTFEKHAGSDLRQPYEHIYVRKNKSLRQCQKDAWRCTRGQTCRRMFSYVPKKTAADQNDDACSVCGDGGDLICCDKCPSTYHLSCMNIEVIGSALKKLKKNSQKNLWTLTLQDHIVGQVAERYTRNWMSHSESEMIIRQNTLGKLSAERIRQPRRILQIRI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01716 619 MobiDBLite consensus disorder prediction 371 385 - -
Pumo4g01716 619 MobiDBLite consensus disorder prediction 219 243 - -
Pumo4g01716 619 MobiDBLite consensus disorder prediction 11 48 - -
Pumo4g01716 619 MobiDBLite consensus disorder prediction 364 398 - -
Pumo4g01716 619 PANTHER PHD FINGER PROTEIN 12 296 547 IPR042163 GO:0003714|GO:0045892
Pumo4g01716 619 SMART PHD_3 519 582 IPR001965 -
Pumo4g01716 619 MobiDBLite consensus disorder prediction 328 348 - -
Pumo4g01716 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 600 IPR013083 -
Pumo4g01716 619 Pfam Tify domain binding domain 440 490 IPR032308 -
Pumo4g01716 619 SUPERFAMILY FYVE/PHD zinc finger 514 547 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01716 Pumo-Chr4 22582489 22584837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01716 406 549 PHD Transcription Factor Family AT4G14920 46.575 2.02e-34 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01716 - - pvu:PHAVU_009G190800g 488.034