Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01712 ATGTTCGGAGAGAGTAGTAGTACTACCTACGAGTCAGATTTGGCACTCTTGGATTCAATTCGCCGCCACTTGCTGGGCGAGTCCGAATCCATATTCGGAGCCCCGAATTCGCTTTCGGATCGGAGCTCCAGCTTCAGCAGCTTGGATTCGTGTTTGAGCGACAACTGGGGCGAGCTTCCCTTTAAGGAAGACGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGCGACGCCGTTAATGTCGGGTGGGTCCCATCTCTCGATGCCTGGTCGCCCGAAAGCGTCTCGTCGGGTTTTCCGGCGGAGATCGCGGTGAAGCAGGAGCCGGATGTCATGCCGGCGGTGATTAGTCCGCCTCCGGCGGTGATGCAAGAGAAGAAGGTTGCTCCGGCGAAGGGGAAGCACTACCGGGGCGTGAGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTCGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCGTACGACCGCGCCGCCTACCGGATGAGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGGGTTAACTCCGGCGAACCCGACCCGGTGAGAGTGACGTCGAAGCGGTCGTCGTCGCCGGAGAGTGGGGCGGCGCCGGCGAAAAAGAAGAAAGTGGTGATGGGGACGGGGCAGGGGCAAGTGGGAAGTCAAGTGGCAGAGTGTACACGTGGCGAACAGTTATTGGTTGGCTGA 756 0.6138 MFGESSSTTYESDLALLDSIRRHLLGESESIFGAPNSLSDRSSSFSSLDSCLSDNWGELPFKEDDSEDMVLYGVLRDAVNVGWVPSLDAWSPESVSSGFPAEIAVKQEPDVMPAVISPPPAVMQEKKVAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESGAAPAKKKKVVMGTGQGQVGSQVAECTRGEQLLVG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01712 251 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
Pumo4g01712 251 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 PANTHER DNA-BINDING DOMAIN 109 217 IPR044808 GO:0003700|GO:0009873
Pumo4g01712 251 MobiDBLite consensus disorder prediction 200 238 - -
Pumo4g01712 251 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Pumo4g01712 251 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Pumo4g01712 251 FunFam Ethylene-responsive transcription factor 2 134 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01712 Pumo-Chr4 22508558 22510145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01712 11 250 AP2-EREBP Transcription Factor Family AT4G17500 55.805 4.16e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01712 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01712 K09286 - gmx:100803653 404.06