Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01711 ATGGCGAACGCAGCTGAAGTTTCAGCCTTGAACCGCATCAAATTGCATCTTCTAGGGGAACTCTCTCCACTGGCCACTCCCCAAATTAAATTTGATGAAACAAACCCTAGCCCCTCTCAATCTTCCAAATCTGATTCTTCTTCGATTTCTCTCAACCACTACTTCACTGACCTCCTCGAACCTGAAGTTCAATTTCCTATTTTCGAATTTGACTCCAAGCCCCAAATAATCGACCTCGAAACCCCGAAACCCCTATCATCAGTTGAGAAGAAACCTCAATTGAATCGGAAACCGTCGCTGCAAATCTCCGTCCCGAATAAGGCCGAGTGGATCCGATTCGGGAACCCGGAGAAGGTGGTGGCGCCGGAGAAGAAGCACTACAGAGGAGTCCGGCAGAGGCCGTGGGGCAAGTTCGCCGCCGAGATCCGCGACCCGAACAAACGCGGGTCAAGGGTTTGGCTCGGAACATTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGAGCCGCCTTCAGACTCCGTGGCTCCAAGGCCATCCTCAACTTCCCCCTAGAAGTTAGCTCGGCGGAGACCGCCGCCGACGGCGACGGAAAGAGGAAGCGCCGCCGCGAGGAGGAGGAGGTGGTGGAGGAAGTAAAGCCGGTGGTGAAGAGGGAGAGAACGACGGAACAGGATGTGAGTTGTTTTAGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGACAGTGACGTTAAGGATATTTTCAACGTGCCGCCGTTGTCGCCGTTATCTCCTATTCCGGCTTTTGGATTTTCACCGCTCGTGGCTGTGTGA 825 0.5455 MANAAEVSALNRIKLHLLGELSPLATPQIKFDETNPSPSQSSKSDSSSISLNHYFTDLLEPEVQFPIFEFDSKPQIIDLETPKPLSSVEKKPQLNRKPSLQISVPNKAEWIRFGNPEKVVAPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEVSSAETAADGDGKRKRRREEEEVVEEVKPVVKRERTTEQDVSCFREMPLTPSMWTGFWDSDVKDIFNVPPLSPLSPIPAFGFSPLVAV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01711 274 PANTHER DNA-BINDING DOMAIN 93 202 IPR044808 GO:0003700|GO:0009873
Pumo4g01711 274 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 FunFam Ethylene-responsive transcription factor 2 125 186 - -
Pumo4g01711 274 SUPERFAMILY DNA-binding domain 126 186 IPR016177 GO:0003677
Pumo4g01711 274 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Pumo4g01711 274 Gene3D AP2/ERF domain 125 186 IPR036955 GO:0003700|GO:0006355
Pumo4g01711 274 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01711 Pumo-Chr4 22455254 22456445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01711 1 274 AP2-EREBP Transcription Factor Family AT5G47230 48.026 8.78e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01711 AP2 5.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01711 K09286 - gmx:100800453 414.461