Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01701 ATGCATATAGAGGAATTGAAGGGGGGTGAGGTGGTAGAAGGTGGGGAGGAAGGAGGATCGAGGTTTGTGGGTTATGATGCGAAAAGGGTGCTGGTTGGAGCAGGCGCTCGTGCGCTCTTCTACCCAACCCTGTTTTACAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCTCGCTTAAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACGACATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCTTCATTGCATGACATTTGCCGTGCTGTGGACTTCATACATCAAAATGCATTGTCTGGACGAACAACGTATGTCCATTGCAAAGCTGGACGTGGTCGCAGCACGACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGCTGCATATGCTTATGTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAAGATTACTACTACCATCTTATGGTGAGGAGGGTTGTTGGATTCTCTCCCACAGCCAATCTATTAGTAAAGGCTTCTCAGATGGCAGCAGGTTCACGAGATCTTGTGATGTTTGATGACAGTTCTGTAGTGATGGTAACAGAGTCAGATCTGGAAGGTTACGACCCAAGTAGTCGAGCAGGAGCCATGGCAAATGAAATATGGGCAGATTTAAGTGTTGTATACCGTGTACGAGTTGCTGGGCAGGCAGCATTGGCAAGAATATCATGCCTTTGGCTGCGATATGGTACTACTACCAACCAGAAGATGATTTCTACGGAGAAACTGAGCAGCAGCAGGGAAAGCAGTTGCTCAATCAGGGCTAATCACTTGGGAGAAATTAGTGTCGATATCCACGTGTACTGA 996 0.4538 MHIEELKGGEVVEGGEEGGSRFVGYDAKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHDICRAVDFIHQNALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYAYVKSIRPRVLLASSQWQAVQDYYYHLMVRRVVGFSPTANLLVKASQMAAGSRDLVMFDDSSVVMVTESDLEGYDPSSRAGAMANEIWADLSVVYRVRVAGQAALARISCLWLRYGTTTNQKMISTEKLSSSRESSCSIRANHLGEISVDIHVY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01701 331 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Pumo4g01701 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Pumo4g01701 331 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Pumo4g01701 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Pumo4g01701 331 Pfam Dual specificity phosphatase, catalytic domain 82 200 IPR000340 GO:0008138|GO:0016311
Pumo4g01701 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
Pumo4g01701 331 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Pumo4g01701 331 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Pumo4g01701 331 FunFam Dual specificity phosphatase domain protein 59 207 - -
Pumo4g01701 331 CDD PTPMT1 59 201 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01701 Pumo-Chr4 21647463 21652349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01701 28 331 Protein tyrosine phosphatase (PTP) family AT2G35680 61.859 4.79e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01701 - - gmx:100790413 599.742