Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01699 ATGATGGTTCATAAGGAAGATTTGGGTCTGAGTCTAAGCCTCAACTTCCCCCATAATACCCCAAATCCTCAACACCTGACTCTCATGTCGTCCTCTACTCATTCCTCTTCCCCTTCCGGTTGCAATCCTCAAAAACCCTCTTGGAACGAGGCTTTTGCTTCTTCGGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCGTTCCTGCACGGAATCGACGTGAATCGGTTACCTTCCGCCGCAGACATCGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGAGAGAACCCAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGCTGAAACCTCAAGGAAGAAACTCAGACTCTCCAAGGACCAATCAGCTGTTCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAATTGGCACTGGCGAAACAGCTAGGCCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACCACGCTCACTATGTGCCCCTCTTGCGAGCGTGTGGCTGTTCCGTCATCCGCCGTTGATGCTGCCACGCGTCATCATCCCATGGCCCAGGTCCAGCCATCCTCGGCCCATACCCATCGGCCCGTGGGCTTCCGCTGCTCCCATTCCGCGCCGGCCCTTTGA 870 0.5379 MMVHKEDLGLSLSLNFPHNTPNPQHLTLMSSSTHSSSPSGCNPQKPSWNEAFASSDRNSDTCRGETRSFLHGIDVNRLPSAADIEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMDRACSRGISDEEDAETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQVQPSSAHTHRPVGFRCSHSAPAL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01699 289 MobiDBLite consensus disorder prediction 84 139 - -
Pumo4g01699 289 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Pumo4g01699 289 SMART HOX_1 132 194 IPR001356 GO:0003677
Pumo4g01699 289 CDD homeodomain 134 191 IPR001356 GO:0003677
Pumo4g01699 289 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Pumo4g01699 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 270 - -
Pumo4g01699 289 Gene3D - 138 188 - -
Pumo4g01699 289 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Pumo4g01699 289 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Pumo4g01699 289 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Pumo4g01699 289 MobiDBLite consensus disorder prediction 89 104 - -
Pumo4g01699 289 SUPERFAMILY Homeodomain-like 123 191 IPR009057 -
Pumo4g01699 289 FunFam Homeobox-leucine zipper protein 18 121 195 - -
Pumo4g01699 289 MobiDBLite consensus disorder prediction 23 59 - -
Pumo4g01699 289 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Pumo4g01699 289 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Pumo4g01699 289 MobiDBLite consensus disorder prediction 105 139 - -
Pumo4g01699 289 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Pumo4g01699 289 MobiDBLite consensus disorder prediction 23 63 - -
Pumo4g01699 289 Coils Coil 189 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01699 Pumo-Chr4 21627485 21629471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01699 1 275 Homeobox Transcription Factor Family AT4G16780 65.371 5.60e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g01699 HD-ZIP_N 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01699 K09338 - gmx:100813367 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02171 8 58813365 58815382 Pumo4g01699 4 21627485 21629471 PCT