Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01692 ATGGCACCGAGGATTAATGATGGAACAAGCAAGAGAGTAATGAACAGAGGAGCATGGACCCCAGAGGAAGACAGAAAGCTAGCCCAGTGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTGTTGCAATCAAATCAGGTTTAAATAGGTGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTTTTGGGAAACCGGTGGTCTTTGATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTTAATCAGAAAGAGGAGAAACCAGAATCTTCAACAACACAAGAAATGATTGCCAATGCTGTGGACAACCGTGCAATGTCAGAGAATGAGGTTGCAATTAATGAAAGTGGTGGTAACAACTTAGATGTTAGTTTCGACGTGAACGAATTTTTCAACTTCTCTGAGGAATCCTTTGGGTTTGATTGGCTGAACAAGTACTTGGAACTTGATCAGATTCCTGAGAGCACGGAAAGATCTGAATGA 594 0.4158 MAPRINDGTSKRVMNRGAWTPEEDRKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEEKPESSTTQEMIANAVDNRAMSENEVAINESGGNNLDVSFDVNEFFNFSEESFGFDWLNKYLELDQIPESTERSE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01692 197 SMART sant 15 65 IPR001005 -
Pumo4g01692 197 SMART sant 68 116 IPR001005 -
Pumo4g01692 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pumo4g01692 197 FunFam MYB-related transcription factor 15 68 - -
Pumo4g01692 197 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pumo4g01692 197 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo4g01692 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pumo4g01692 197 CDD SANT 73 114 IPR001005 -
Pumo4g01692 197 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 135 - -
Pumo4g01692 197 Gene3D - 16 68 - -
Pumo4g01692 197 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pumo4g01692 197 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo4g01692 197 FunFam transcription repressor MYB5-like 73 142 - -
Pumo4g01692 197 CDD SANT 18 63 IPR001005 -
Pumo4g01692 197 Gene3D - 72 142 - -
Pumo4g01692 197 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01692 Pumo-Chr4 21476601 21478597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01692 10 183 MYB Transcription Factor Family AT3G13540 46.809 3.91e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01692 Myb_DNA-binding 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01692 K09422 - gmx:100799575 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02177 8 58871847 58873495 Pumo4g01692 4 21476601 21478597 PCT