Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01687 ATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTCTATTGTCCGTTTGACAAGGCCTACTCGCCCAGACAAGGCTCGCCGCCTGGGTTACAAGGCTAAGCAGGGTTATGTGATTTACCGTGTTCGTGTCCGGAGGGGTGGCCGCAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCAACCAACCAGGGTGTTACTCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGACTCAGGGTCCTCAATTCTTACTGGGTGAACGAGGACTCAACTTACAAATATTTTGAGATCATTATGGTGGATGTTGCCCACAGTGCTGTAAGAAATGATCCAAGAATCAACTGGCTCTGCAACCCAGTGCATAAACACAGGGAACTGCGTGGCCTCACTTCTGCTGGGAAAAGTAACAGGGGTTTACGGGGCAGAGGACATCTCTACCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCTCTTCGTCGCTACCGTTAA 561 0.5098 MRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01687 186 FunFam Ribosomal protein L15 1 186 - -
Pumo4g01687 186 MobiDBLite consensus disorder prediction 146 171 - -
Pumo4g01687 186 Gene3D Ribosomal protein l15e 1 186 IPR024794 GO:0003735|GO:0005840
Pumo4g01687 186 SMART Ribosomal_L15e_2 1 175 IPR000439 GO:0003735|GO:0005840|GO:0006412
Pumo4g01687 186 Coils Coil 183 186 - -
Pumo4g01687 186 ProSitePatterns Ribosomal protein L15e signature. 28 51 IPR020925 GO:0003735|GO:0005840|GO:0006412
Pumo4g01687 186 MobiDBLite consensus disorder prediction 157 171 - -
Pumo4g01687 186 Pfam Ribosomal L15 1 172 IPR000439 GO:0003735|GO:0005840|GO:0006412
Pumo4g01687 186 PANTHER RIBOSOMAL PROTEIN L15 1 186 IPR000439 GO:0003735|GO:0005840|GO:0006412
Pumo4g01687 186 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 177 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01687 Pumo-Chr4 21433691 21436050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01687 1 186 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.860 6.75e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01687 K02877 - gmx:100306052 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02178 8 58889411 58891556 Pumo4g01687 4 21433691 21436050 PCT