Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01677 ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCATTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCACCTTGCTACCCTTCCTCTCCCTCCAAAGCCTCAAACATTCACTCACTCATCCTTCTCCTATTCCTCTTCCTCTGACTCAGAACAAGAAGAACCACTCGGAGAAGAATCTCCTAGTTACTCGTTAAGGGAGAATCCTAAGAAAAGCTTCAGGGTCCCGGATCCTGAGGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGCGGAACCGGAAATCCACCATGCCGAAGCTCAGCTTCGTGGTCTCCACACCACCCCACCCCGAACCCGAACCTGTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACGTCGCCATGTGCCTCATGATGCTCTCCCGAGACACGTGGAACGTAGCCACCAATGCTGGTCCACCCAAGAGTCGCTGCAGCGGATCAGAGATCAAGCCCAAGCGAGTCCGCGGGAAGCACCTCTGCGACAATTGCGGGAAAGCCTTTCGATCCTCTCGCGCGTTGGGGAGTCACAGAAGCGTGTGCTGCCGCCACCAGGAAGGTGAAAATAATAACATCACTAGTAATAACAATACCAAGGTTTTTGAATGTCCGTTTTGTTACAAGGTGTTTGGGTCTGGTCAGGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCCTCCTCTTCAACAGTTAACGATTCCGTTAAATTGAAGCAGAGCTTCATAGATCTCAACTTGCCAGCTCTGGCTGAAGACGACGACCTTAGCGTTGTTTCTGATGCGTAA 834 0.5192 MDRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTFTHSSFSYSSSSDSEQEEPLGEESPSYSLRENPKKSFRVPDPEDRESETESKNPTRQRSKRNRKSTMPKLSFVVSTPPHPEPEPVSSVSDTSPEEDVAMCLMMLSRDTWNVATNAGPPKSRCSGSEIKPKRVRGKHLCDNCGKAFRSSRALGSHRSVCCRHQEGENNNITSNNNTKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSVKLKQSFIDLNLPALAEDDDLSVVSDA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01677 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 204 IPR013087 -
Pumo4g01677 277 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Pumo4g01677 277 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 277 IPR044303 GO:0006355
Pumo4g01677 277 SMART c2h2final6 174 199 IPR013087 -
Pumo4g01677 277 SMART c2h2final6 4 26 IPR013087 -
Pumo4g01677 277 SMART c2h2final6 216 238 IPR013087 -
Pumo4g01677 277 Pfam C2H2-type zinc finger 3 28 - -
Pumo4g01677 277 Pfam C2H2-type zinc finger 174 193 - -
Pumo4g01677 277 Pfam C2H2-type zinc finger 215 239 - -
Pumo4g01677 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 216 238 IPR013087 -
Pumo4g01677 277 MobiDBLite consensus disorder prediction 28 131 - -
Pumo4g01677 277 SUPERFAMILY beta-beta-alpha zinc fingers 174 238 IPR036236 -
Pumo4g01677 277 Gene3D Classic Zinc Finger 171 238 - -
Pumo4g01677 277 MobiDBLite consensus disorder prediction 72 94 - -
Pumo4g01677 277 MobiDBLite consensus disorder prediction 35 53 - -
Pumo4g01677 277 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pumo4g01677 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pumo4g01677 277 ProSitePatterns Zinc finger C2H2 type domain signature. 218 238 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01677 Pumo-Chr4 21304030 21305029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01677 1 274 C2H2 Transcription Factor Family AT3G60580 35.505 2.99e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g01677 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01677 - - gmx:100806512 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02197 8 59034453 59036128 Pumo4g01677 4 21304030 21305029 PCT