Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01672 ATGCTATTACAGTGCTATCTTATGTCTCCTCTCTTCATCTCAATGCAAATGCTTCTGGTTTTCAGTTGCATTTTATTATTGCATGCAACAACCGTGACATGCACAACCTACCACGACAGCACCCCCAAAATAGTCTCTTCCACAAACTCGTCCAAGTGGTTCGGACCCATTGGACACCGAGTAATCACCGTCGACGTTAACGGTGGTGGCCATTTCCGGTCAGTCCAAGCCGCCGTCAATGCTGTCCTGGATAACAACAGAATGAACGTCCTTATTCAAATAAGCGCCGGCTATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTACGTTTCAAGGCGCGGGAAGGGATGTGACGGTGATAGAATGGCATGATAGGGCTAGTGACCCTGGTCCCAACGGCCAACAACTGCGTACTTACAGAACAGCTTCTGTTACGGTTTTTGCCAATTATTTCTCTGCCAGGAATATCAGCTTCAAGAACACCGCACCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATATCTGGTGACAAAGCCTATTTCTCCGGCTGTGGATTCTACGGTGCACAAGACACTCTTTGCGACGATGCTGGTCGCCATTATTTCAAAGAATGTTACATCGAGGGCTCTATAGATTTCATTTTTGGCAATGGCAGGTCAATGTACAAGGATTGCAAGCTCCACTCAATTGCCACGAGGTTCGGGTCAATAGCAGCCCAAGATAGGCAATTCCCATACCAGAAGACGGGCTTCGCATTCGTACGGTGCAAGGTGACAGGAACAGGCCCAATTTACGTAGGCCGTGCAATGGGCCAGTACTCTAGGATTATCTATGCCTACACCTACTTCGATGACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCAACAACAGAAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGAGCAGCGGCTATACGTGGTGTCCCATTGGCCCAAGAGCTAGATTTTAAATCTGCCCATCCATTCCTGGCCAAGAGTTTTGTCAATGGAAGACATTGGATTGCACCCTCTGATGCTTAG 1092 0.4908 MLLQCYLMSPLFISMQMLLVFSCILLLHATTVTCTTYHDSTPKIVSSTNSSKWFGPIGHRVITVDVNGGGHFRSVQAAVNAVLDNNRMNVLIQISAGYYIEKVVVPVTKPYITFQGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCKLHSIATRFGSIAAQDRQFPYQKTGFAFVRCKVTGTGPIYVGRAMGQYSRIIYAYTYFDDIVAHGGWDDWNTSNNRNKTVFFGVYKCWGPGAAAIRGVPLAQELDFKSAHPFLAKSFVNGRHWIAPSDA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01672 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 58 359 - -
Pumo4g01672 363 Gene3D - 58 362 IPR012334 -
Pumo4g01672 363 FunFam Pectinesterase 57 360 - -
Pumo4g01672 363 SUPERFAMILY Pectin lyase-like 59 360 IPR011050 -
Pumo4g01672 363 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Pumo4g01672 363 Pfam Pectinesterase 62 354 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01672 Pumo-Chr4 21223455 21228378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01672 6 363 Carbohydrate Esterase AT5G47500 70.112 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01672 - - gmx:100796327 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01672 4 21223455 21228378 Pumo4g01672 4 21223455 21228378 ECH
Pumo8g02202 8 59075532 59079168 Pumo4g01672 4 21223455 21228378 PCT