Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01667 ATGACTTCCACTACTATGTTGTTGTTGGTCGTGTTCACTATACTCTGTATTTCACACCCCTCATGGCAAATGGTAATCTTGCCTTTAACACACACTCTTTCCCAAGCCCAATTCAACAGCACCCACCACCTCCTCAAATCCACCTCCGCCCGTTCCGCCGCCCGCTTCCGCCGCCAACTCTCCCTCCCTCTCTCCCCGGGCAGCGACTACACTCTCTCATTCAACCTGGGCCCGCAGGCCCAGGCCCAGCCCATAACGCTCTTCATGGACACCGGCAGCGACTTAGTCTGGTTCCCCTGCGCCCCTTTTAAATGCATACTCTGCGAAGGAAAGCCCAACGAGCCCAACGCCTCTCCCCCCACCAACATCACCCGAAGCGTCGCCGTTTCATGCAAGTCCCCCGCATGCTCCGCAGCGCACAACTTAGCCTCTCCCTCCGATCTCTGCGCCACCGCTCGTTGCCCTCTCGAATCAATCGAAACCTCCGATTGCGCTAATTTCAAGTGTCCACCGTTTTACTATGCCTACGGCGACGGAAGCTTAATCGCGCGTCTCTATCGTGACACGCTCTCTCTCTCTTCTTTGTTTCTCAGAAATTTTACATTCGGTTGCGCTCACACAACCCTCGCCGAACCTACCGGAGTCGCCGGATTCGGTCGCGGTTTACTCTCTCTCCCGGCGCAGCTCGCCACACTCTCTCCTCAACTCGGAAACAGGTTTTCTTATTGCCTTGTTTCTCACTCGTTTGACTCGGAACGAGTGAGAAAACCGAGTCCACTCATTCTCGGACGTTACGAGGAGGAGAAGGAGAAGATTGGTGGCGGTGGTGGAATGGCGGAGTTTGTGTACACGCCTATGCTTGAAAATCCTAAGCATCCTTATTTTTATACCGTTGGGTTAAGCGGAATCTCCGTCGGGAAACGGACTATTCCGGCGCCGGAGATGCTGCGGCGGGTGAACAATCGAGGCGATGGCGGCGTGGTTGTGGATTCCGGCACTACTTTCACGATGTTACCGGCGGGGTTCTATAACTCGGTGGTGGACGAGTTTGACCGCCGAGTCGGGCGAGTCAACGAGCGCGCGCGTAAGATTGAAGAAAAAACGGGACTCGCGCCGTGCTATTATTTGAACGCGGTGGCGGAAGTGCCGGCTCTGACGCTGCGTTTTGCTGGGGGGAATTCGAGTGTGGTGCTGCCTAAGAAGAATTATTTTTACGAGTTTTTGGACGGTAGTGATGGGTCGAAGGGGAAGAGGAGGGTGGGGTGTTTGATGCTGATGAACGGTGGAGATGAGGAGGAGTTGAGCGGTGGGCCCGGGGCCACACTGGGGAATTACCAGCAGCAGGGGTTTGAGGTTGTGTATGACCTGGAAGAGAAGCGCGTGGGGTTCGCTAGGAGGCAGTGCGCGTCGCTTTGGGAGAGACTCAATCGCGACAAAAACTAG 1443 0.5551 MTSTTMLLLVVFTILCISHPSWQMVILPLTHTLSQAQFNSTHHLLKSTSARSAARFRRQLSLPLSPGSDYTLSFNLGPQAQAQPITLFMDTGSDLVWFPCAPFKCILCEGKPNEPNASPPTNITRSVAVSCKSPACSAAHNLASPSDLCATARCPLESIETSDCANFKCPPFYYAYGDGSLIARLYRDTLSLSSLFLRNFTFGCAHTTLAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSERVRKPSPLILGRYEEEKEKIGGGGGMAEFVYTPMLENPKHPYFYTVGLSGISVGKRTIPAPEMLRRVNNRGDGGVVVDSGTTFTMLPAGFYNSVVDEFDRRVGRVNERARKIEEKTGLAPCYYLNAVAEVPALTLRFAGGNSSVVLPKKNYFYEFLDGSDGSKGKRRVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEEKRVGFARRQCASLWERLNRDKN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01667 480 CDD pepsin_A_like_plant 70 468 IPR034161 -
Pumo4g01667 480 SUPERFAMILY Acid proteases 66 473 IPR021109 -
Pumo4g01667 480 Pfam Xylanase inhibitor C-terminal 296 464 IPR032799 -
Pumo4g01667 480 Coils Coil 347 367 - -
Pumo4g01667 480 PANTHER ASPARTYL PROTEASES 7 462 IPR001461 GO:0004190|GO:0006508
Pumo4g01667 480 Gene3D Acid Proteases 277 473 IPR021109 -
Pumo4g01667 480 ProSiteProfiles Peptidase family A1 domain profile. 70 464 IPR033121 -
Pumo4g01667 480 Gene3D Acid Proteases 61 263 IPR021109 -
Pumo4g01667 480 FunFam aspartic proteinase nepenthesin-1 270 473 - -
Pumo4g01667 480 FunFam Probable aspartyl protease At4g16563 60 262 - -
Pumo4g01667 480 Pfam Xylanase inhibitor N-terminal 70 263 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01667 Pumo-Chr4 21143814 21145774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01667 89 471 Miscellaneous Gene Families AT1G44130 24.384 2.70e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01667 - - gmx:100805699 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01667 4 21143814 21145774 Pumo4g01667 4 21143814 21145774 ECH
Pumo4g01667 4 21143814 21145774 Pumo10g01831 10 24102407 24106392 ECH
Pumo8g02207 8 59134170 59136189 Pumo4g01667 4 21143814 21145774 PCT