Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01647 ATGATGCCATTCAAATGGCTGAAGATGTCGAACTTCACTTGCTTGGAACTTCTGCATTTGCGTTCTGGGGATTCTGTTGTTGTTATTGGAGGTTCTAATGCAGCTGGTCGTCCATCAGAAGATGTTGATTCCAGAACCATTTTTGTTAGCAATGTTCATTTTGCTGCCACCGAAGATGGCCTGTCTCGGCATCTTAATAGATTTGGGCAAGTTTTAAAAGTGATTATAGTTACTGATGCAGCAACAGGGCAGCCAAAAGGGTTGTCACATGTGAAACAATTTTTGTTTTCTTTCTTTTTATATCCTTTTCGATTAAGCCTTTTTGATTTTGATTTGTGCTTACTTAGCTACCTTGAAGCCAAAGAATCCATGGTATATAGCTACACAAAGAACTGCAATGCATTTGCTGCTAAACAGTCAAAGTATGAAGCTAAGAAGTTATCTGGGATCATTCCTGAGTCTAAAAGCTTCAAGGACGATGGATTTGGTCCTCCACCAGCTAGATGGAAAGGATCTTGTGGCCACTATGCTAATTTCTCCGGCTGCAATAAGTAA 555 0.4 MMPFKWLKMSNFTCLELLHLRSGDSVVVIGGSNAAGRPSEDVDSRTIFVSNVHFAATEDGLSRHLNRFGQVLKVIIVTDAATGQPKGLSHVKQFLFSFFLYPFRLSLFDFDLCLLSYLEAKESMVYSYTKNCNAFAAKQSKYEAKKLSGIIPESKSFKDDGFGPPPARWKGSCGHYANFSGCNK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01647 184 Gene3D - 28 94 IPR012677 -
Pumo4g01647 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 89 IPR000504 GO:0003723
Pumo4g01647 184 Gene3D Peptidase S8/S53 domain 148 184 IPR036852 GO:0004252|GO:0006508
Pumo4g01647 184 SUPERFAMILY RNA-binding domain, RBD 32 90 IPR035979 GO:0003676
Pumo4g01647 184 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 31 94 IPR040366 GO:0008143|GO:0043488|GO:1900364
Pumo4g01647 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01647 Pumo-Chr4 20958249 20960008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01647 115 183 Subtilisin-like Serine Gene Family AT4G00230 40.171 1.70e-18 80.5